PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g001931m
Common NameCISIN_1g001728mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARF
Protein Properties Length: 996aa    MW: 111490 Da    PI: 7.946
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g001931mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.45.4e-23101202199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   
  orange1.1g001931m 101 FCKTLTASDTSTHGGFSVPRRAAEKIfppldysM-QPPA-QEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI-- 188
                        99*****************************954.5444.38************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++ +l+++++r+
  orange1.1g001931m 189 RDEKSQLLLGIRRA 202
                        45677789999997 PP
2Auxin_resp123.61.4e-40227309183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+++s+F+++YnPras+seFv++++k++ka++++vs+GmRf+m+fete+s  rr++Gt++++sdldp+rW+nS+Wr+L+
  orange1.1g001931m 227 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQ 309
                        79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.02E-4491230IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-4293216IPR015300DNA-binding pseudobarrel domain
CDDcd100172.66E-20100201No hitNo description
PfamPF023626.4E-21101202IPR003340B3 DNA binding domain
SMARTSM010193.7E-24101203IPR003340B3 DNA binding domain
PROSITE profilePS5086312.421101203IPR003340B3 DNA binding domain
PfamPF065071.9E-35227309IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 996 aa     Download sequence    Send to blast
MACLCRATGF FASSWKPGCL LPSRPQRVAA SMQKENDFIP NYPNLPSKLI CMLHSVTLHA  60
DPETDEVYAQ MTLQPVNKYE KEAILASDMG LKQNRQPTEF FCKTLTASDT STHGGFSVPR  120
RAAEKIFPPL DYSMQPPAQE IVARDLHDTT WTFRHIYRGQ PKRHLLTTGW SVFVSTKRLF  180
AGDSVLFIRD EKSQLLLGIR RANRQQPALS SSVISSDSMH IGILAAAAHA AANNSPFTIF  240
YNPRASPSEF VIPLAKYNKA MYTQVSLGMR FRMMFETEES GVRRYMGTIT SISDLDPLRW  300
KNSQWRNLQV GWDESTAGER PSRVSLWETE PVVTPFYICP PPFFRPKFPK QPGMPDDESD  360
IENAFKRAMP WLGDDFGMKD ATSSIFPGLS LVQWMSMQQN NQFPAAQSGF FPSMVSSTGL  420
HSNFGTDDPS KLLNFQASAL AAPNLQFSKA NPQNQVNQLP QSPIAWTQQQ QLQHLLQNPL  480
NQQQQQHPQL HQQRQQQQQL LHPQQSQQQQ QQQQNHHHHN QQPPPPPQLQ PSPTPPHSQS  540
QSQSPVPQRP QQQPQQQQQQ PQQQIFLPTH VNNGVLVPNA NQNVQQPTVY SQLQQPQLLT  600
SNTQAPQGIL SNNKNSYQLT SLPQDSQFQQ QMEQSTGPLQ RQQQQSQLQQ SSLQFLQQSL  660
AQRAQQQPQV QQLAQQSMSD QQLQSQLQQK LQQQQQQQLL SPAGSLLQPQ LLQQQLAHQQ  720
NQQLSQLPPS QNHQQQLSNN LSASVLVQPQ QLPMNQPQNQ NRPLTGTRAH SNHTDGDAPS  780
CSTSPSSNNC QISPSNFLNR NQQGPAMLMG DSVVEPSSNL VQELHSKSDA RIKHELPISK  840
GPEHLKYNGS MTDQVEASSS GTSYCLDPGN IQQNFSLPTY CLDGDTQSHP RNSLPFVANI  900
DGMAPDTLLS RGYDSQKDLH NLLSNYGGTP RDIETELSTA AISSQSFAVP NIPFKPACSN  960
EVGINEAGVL GNGLWANQTQ RMRTFTKVCY AIYSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1493933096388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006452860.10.0auxin response factor 19 isoform X1
TrEMBLA0A067GEF90.0A0A067GEF9_CITSI; Auxin response factor
STRINGXP_006452860.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19