PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g001809m

Common Name

CISIN_1g001774mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Nin-like

Protein Properties

Length: 1011aa MW: 110538 Da PI: 5.2965

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g001809m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.7	2.7e-29	598	649	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ orange1.1g001809m 598 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 649 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.881	588	669	IPR003035	RWP-RK domain
Pfam	PF02042	2.7E-26	601	649	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.68E-23	897	987	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.4E-24	900	981	No hit	No description
PROSITE profile	PS51745	23.136	902	984	IPR000270	PB1 domain
SMART	SM00666	5.7E-23	902	984	IPR000270	PB1 domain
CDD	cd06407	2.31E-33	903	983	No hit	No description
Pfam	PF00564	3.0E-17	905	983	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1011 aa Download sequence Send to blast
MEHPFSPKEK GTGYWASPRA PMENLAPLDC GTRSSNSGDL FNNFSDLLNF DAYAGWCNSP 60 SVTDQMFASY GFSSFQSTPC ASFDTSNVMA SNSSVASEGG GTSNAMESSF DRGDRIGFQQ 120 TSTDCYPIDT NDADDLVPKQ SSGVYRENNT NMSNSMICRP VPPSLDEKML RALSFFKLSS 180 GGGILAQVWV PRKQGDDYIL STSDQPYLLD QMLAGYREVS RKFTFSAEAK PGTFLGLPGR 240 VFSSKVPEWT SNVAYYNEAE YARVTHAVNH AVRSCIALPV FQFPEISCSA VLEIVSVKEK 300 PNFDAEIENI CNALQAVNLR TTAPPRLLPQ NISRNQKAAL AEITDVLRAV CHAHRLPLAL 360 TWIPCNYDEE AVDEVIKVRV RHSNTSSDGK SVLCIEGTAC YVNDSDMQGF VHACSEHYLE 420 EGQGVAGKAL QSNHPFFFPD VKLYDITEFP LVHHARKFGL NAAVAIRLRS TYTGDDDYIL 480 EFFLPVTIKG SSEQQLLLNN LSGTMQRMCR SLRTVSDAEL IQDEGSKFGF QKEVVSNFPP 540 MVMSRRNSQS ALSDSDFNSI EKITLSVSNS KSGLEADGPP EQVMSGSRRP MEKKRSTAEK 600 NVSLSVLQQY FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLKKIQTVL 660 NSVQGVEGGL KFDPTTGGFV AAGSIIQEFD AQKSSLHPDK NMPVRNSESI TKDSTSIPPT 720 LSIDGEKFVV KVEEDECSVD KNQVGPLSML IQNSSKGELN KSSVNLIDCS EDSKLILTDA 780 GPFWQARLGT AAWDSPDTAS MVSYYAKGGE KGARNKNGLQ LESSDCHFVS QSSNSLAAAD 840 NMDTRREGDD GIIENNQPTT SSTTDSSNGS GSLVHASSVS SPSFEEGKHL KIHPGSDDIG 900 SKIIVKATYK EDIIRFKFDP SAGCFQLYEE VARRLKLQNG TFQLKYLDDE EEWVMLVSDS 960 DLQECFDILE SLGKRSVRFL VRDISCNVGS SGSSNCFLAG SSSCFLAGVS *

Sequence ? help Back to Top

Protein Sequence Length: 1011 aa Download sequence Send to blast

MEHPFSPKEK GTGYWASPRA PMENLAPLDC GTRSSNSGDL FNNFSDLLNF DAYAGWCNSP  60
SVTDQMFASY GFSSFQSTPC ASFDTSNVMA SNSSVASEGG GTSNAMESSF DRGDRIGFQQ  120
TSTDCYPIDT NDADDLVPKQ SSGVYRENNT NMSNSMICRP VPPSLDEKML RALSFFKLSS  180
GGGILAQVWV PRKQGDDYIL STSDQPYLLD QMLAGYREVS RKFTFSAEAK PGTFLGLPGR  240
VFSSKVPEWT SNVAYYNEAE YARVTHAVNH AVRSCIALPV FQFPEISCSA VLEIVSVKEK  300
PNFDAEIENI CNALQAVNLR TTAPPRLLPQ NISRNQKAAL AEITDVLRAV CHAHRLPLAL  360
TWIPCNYDEE AVDEVIKVRV RHSNTSSDGK SVLCIEGTAC YVNDSDMQGF VHACSEHYLE  420
EGQGVAGKAL QSNHPFFFPD VKLYDITEFP LVHHARKFGL NAAVAIRLRS TYTGDDDYIL  480
EFFLPVTIKG SSEQQLLLNN LSGTMQRMCR SLRTVSDAEL IQDEGSKFGF QKEVVSNFPP  540
MVMSRRNSQS ALSDSDFNSI EKITLSVSNS KSGLEADGPP EQVMSGSRRP MEKKRSTAEK  600
NVSLSVLQQY FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLKKIQTVL  660
NSVQGVEGGL KFDPTTGGFV AAGSIIQEFD AQKSSLHPDK NMPVRNSESI TKDSTSIPPT  720
LSIDGEKFVV KVEEDECSVD KNQVGPLSML IQNSSKGELN KSSVNLIDCS EDSKLILTDA  780
GPFWQARLGT AAWDSPDTAS MVSYYAKGGE KGARNKNGLQ LESSDCHFVS QSSNSLAAAD  840
NMDTRREGDD GIIENNQPTT SSTTDSSNGS GSLVHASSVS SPSFEEGKHL KIHPGSDDIG  900
SKIIVKATYK EDIIRFKFDP SAGCFQLYEE VARRLKLQNG TFQLKYLDDE EEWVMLVSDS  960
DLQECFDILE SLGKRSVRFL VRDISCNVGS SGSSNCFLAG SSSCFLAGVS *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.11858	0.0	fruit

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KX056271	0.0	KX056271.1 Citrus trifoliata transcription factor NLP8 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006442936.1	0.0	protein NLP9 isoform X2
Refseq	XP_015386041.1	0.0	protein NLP9-like isoform X2
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A067E6F7	0.0	A0A067E6F7_CITSI; Uncharacterized protein
STRING	XP_006478830.1	0.0	(Citrus sinensis)
STRING	XP_006442937.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	orange1.1g001809m

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]