PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g001787m
Common NameCISIN_1g001728mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARF
Protein Properties Length: 1014aa    MW: 113485 Da    PI: 7.2459
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g001787mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.45.5e-23119220199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   
  orange1.1g001787m 119 FCKTLTASDTSTHGGFSVPRRAAEKIfppldysM-QPPA-QEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI-- 206
                        99*****************************954.5444.38************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++ +l+++++r+
  orange1.1g001787m 207 RDEKSQLLLGIRRA 220
                        45677789999997 PP

2Auxin_resp123.61.4e-40245327183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+++s+F+++YnPras+seFv++++k++ka++++vs+GmRf+m+fete+s  rr++Gt++++sdldp+rW+nS+Wr+L+
  orange1.1g001787m 245 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQ 327
                        79*******************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.05E-44109248IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-42111234IPR015300DNA-binding pseudobarrel domain
CDDcd100172.74E-20118219No hitNo description
PROSITE profilePS5086312.421119221IPR003340B3 DNA binding domain
PfamPF023626.6E-21119220IPR003340B3 DNA binding domain
SMARTSM010193.7E-24119221IPR003340B3 DNA binding domain
PfamPF065071.9E-35245327IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1014 aa     Download sequence    Send to blast
MLTETGLWER KTINSELWHA CAGPLVSLPP VGSLVVYFPQ GHSEQVAASM QKENDFIPNY  60
PNLPSKLICM LHSVTLHADP ETDEVYAQMT LQPVNKYEKE AILASDMGLK QNRQPTEFFC  120
KTLTASDTST HGGFSVPRRA AEKIFPPLDY SMQPPAQEIV ARDLHDTTWT FRHIYRGQPK  180
RHLLTTGWSV FVSTKRLFAG DSVLFIRDEK SQLLLGIRRA NRQQPALSSS VISSDSMHIG  240
ILAAAAHAAA NNSPFTIFYN PRASPSEFVI PLAKYNKAMY TQVSLGMRFR MMFETEESGV  300
RRYMGTITSI SDLDPLRWKN SQWRNLQVGW DESTAGERPS RVSLWETEPV VTPFYICPPP  360
FFRPKFPKQP GMPDDESDIE NAFKRAMPWL GDDFGMKDAT SSIFPGLSLV QWMSMQQNNQ  420
FPAAQSGFFP SMVSSTGLHS NFGTDDPSKL LNFQASALAA PNLQFSKANP QNQVNQLPQS  480
PIAWTQQQQL QHLLQNPLNQ QQQQHPQLHQ QRQQQQQLLH PQQSQQQQQQ QQNHHHHNQQ  540
PPPPPQLQPS PTPPHSQSQS QSPVPQRPQQ QPQQQQQQPQ QQIFLPTHVN NGVLVPNANQ  600
NVQQPTVYSQ LQQPQLLTSN TQAPQGILSN NKNSYQLTSL PQDSQFQQQM EQSTGPLQRQ  660
QQQSQLQQSS LQFLQQSLAQ RAQQQPQVQQ LAQQSMSDQQ LQSQLQQKLQ QQQQQQLLSP  720
AGSLLQPQLL QQQLAHQQNQ QLSQLPPSQN HQQQLSNNLS ASVLVQPQQL PMNQPQNQNR  780
PLTGTRAHSN HTDGDAPSCS TSPSSNNCQI SPSNFLNRNQ QGPAMLMGDS VVEPSSNLVQ  840
ELHSKSDARI KHELPISKGP EHLKYNGSMT DQVEASSSGT SYCLDPGNIQ QNFSLPTYCL  900
DGDTQSHPRN SLPFVANIDG MAPDTLLSRG YDSQKDLHNL LSNYGGTPRD IETELSTAAI  960
SSQSFAVPNI PFKPACSNEV GINEAGVLGN GLWANQTQRM RTFTKVCYAI YSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1731234850388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024034120.10.0auxin response factor 19 isoform X2
TrEMBLA0A067G5F90.0A0A067G5F9_CITSI; Auxin response factor
STRINGXP_006452860.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19