PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g001787m | ||||||||
Common Name | CISIN_1g001728mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ARF | ||||||||
Protein Properties | Length: 1014aa MW: 113485 Da PI: 7.2459 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.4 | 5.5e-23 | 119 | 220 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F orange1.1g001787m 119 FCKTLTASDTSTHGGFSVPRRAAEKIfppldysM-QPPA-QEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI-- 206 99*****************************954.5444.38************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 ++++ +l+++++r+ orange1.1g001787m 207 RDEKSQLLLGIRRA 220 45677789999997 PP | |||||||
2 | Auxin_resp | 123.6 | 1.4e-40 | 245 | 327 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++ka++++vs+GmRf+m+fete+s rr++Gt++++sdldp+rW+nS+Wr+L+ orange1.1g001787m 245 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQ 327 79*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.05E-44 | 109 | 248 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-42 | 111 | 234 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.74E-20 | 118 | 219 | No hit | No description |
PROSITE profile | PS50863 | 12.421 | 119 | 221 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.6E-21 | 119 | 220 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.7E-24 | 119 | 221 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.9E-35 | 245 | 327 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1014 aa Download sequence Send to blast |
MLTETGLWER KTINSELWHA CAGPLVSLPP VGSLVVYFPQ GHSEQVAASM QKENDFIPNY 60 PNLPSKLICM LHSVTLHADP ETDEVYAQMT LQPVNKYEKE AILASDMGLK QNRQPTEFFC 120 KTLTASDTST HGGFSVPRRA AEKIFPPLDY SMQPPAQEIV ARDLHDTTWT FRHIYRGQPK 180 RHLLTTGWSV FVSTKRLFAG DSVLFIRDEK SQLLLGIRRA NRQQPALSSS VISSDSMHIG 240 ILAAAAHAAA NNSPFTIFYN PRASPSEFVI PLAKYNKAMY TQVSLGMRFR MMFETEESGV 300 RRYMGTITSI SDLDPLRWKN SQWRNLQVGW DESTAGERPS RVSLWETEPV VTPFYICPPP 360 FFRPKFPKQP GMPDDESDIE NAFKRAMPWL GDDFGMKDAT SSIFPGLSLV QWMSMQQNNQ 420 FPAAQSGFFP SMVSSTGLHS NFGTDDPSKL LNFQASALAA PNLQFSKANP QNQVNQLPQS 480 PIAWTQQQQL QHLLQNPLNQ QQQQHPQLHQ QRQQQQQLLH PQQSQQQQQQ QQNHHHHNQQ 540 PPPPPQLQPS PTPPHSQSQS QSPVPQRPQQ QPQQQQQQPQ QQIFLPTHVN NGVLVPNANQ 600 NVQQPTVYSQ LQQPQLLTSN TQAPQGILSN NKNSYQLTSL PQDSQFQQQM EQSTGPLQRQ 660 QQQSQLQQSS LQFLQQSLAQ RAQQQPQVQQ LAQQSMSDQQ LQSQLQQKLQ QQQQQQLLSP 720 AGSLLQPQLL QQQLAHQQNQ QLSQLPPSQN HQQQLSNNLS ASVLVQPQQL PMNQPQNQNR 780 PLTGTRAHSN HTDGDAPSCS TSPSSNNCQI SPSNFLNRNQ QGPAMLMGDS VVEPSSNLVQ 840 ELHSKSDARI KHELPISKGP EHLKYNGSMT DQVEASSSGT SYCLDPGNIQ QNFSLPTYCL 900 DGDTQSHPRN SLPFVANIDG MAPDTLLSRG YDSQKDLHNL LSNYGGTPRD IETELSTAAI 960 SSQSFAVPNI PFKPACSNEV GINEAGVLGN GLWANQTQRM RTFTKVCYAI YSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-173 | 12 | 348 | 50 | 388 | Auxin response factor 5 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024034120.1 | 0.0 | auxin response factor 19 isoform X2 | ||||
TrEMBL | A0A067G5F9 | 0.0 | A0A067G5F9_CITSI; Auxin response factor | ||||
STRING | XP_006452860.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g001787m |