PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g001728m | ||||||||
Common Name | CISIN_1g001728mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ARF | ||||||||
Protein Properties | Length: 1021aa MW: 114037 Da PI: 7.3483 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.4 | 5.6e-23 | 126 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F orange1.1g001728m 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldysM-QPPA-QEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI-- 213 99*****************************954.5444.38************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 ++++ +l+++++r+ orange1.1g001728m 214 RDEKSQLLLGIRRA 227 45677789999997 PP | |||||||
2 | Auxin_resp | 123.5 | 1.4e-40 | 252 | 334 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++ka++++vs+GmRf+m+fete+s rr++Gt++++sdldp+rW+nS+Wr+L+ orange1.1g001728m 252 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQ 334 79*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.06E-44 | 116 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-42 | 118 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.77E-20 | 125 | 226 | No hit | No description |
Pfam | PF02362 | 6.7E-21 | 126 | 227 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.7E-24 | 126 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.421 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.9E-35 | 252 | 334 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1021 aa Download sequence Send to blast |
MKPPANGFLP SSAEGERKTI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE 60 NDFIPNYPNL PSKLICMLHS VTLHADPETD EVYAQMTLQP VNKYEKEAIL ASDMGLKQNR 120 QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQEIVARD LHDTTWTFRH 180 IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS 240 SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYTQV SLGMRFRMMF 300 ETEESGVRRY MGTITSISDL DPLRWKNSQW RNLQVGWDES TAGERPSRVS LWETEPVVTP 360 FYICPPPFFR PKFPKQPGMP DDESDIENAF KRAMPWLGDD FGMKDATSSI FPGLSLVQWM 420 SMQQNNQFPA AQSGFFPSMV SSTGLHSNFG TDDPSKLLNF QASALAAPNL QFSKANPQNQ 480 VNQLPQSPIA WTQQQQLQHL LQNPLNQQQQ QHPQLHQQRQ QQQQLLHPQQ SQQQQQQQQN 540 HHHHNQQPPP PPQLQPSPTP PHSQSQSQSP VPQRPQQQPQ QQQQQPQQQI FLPTHVNNGV 600 LVPNANQNVQ QPTVYSQLQQ PQLLTSNTQA PQGILSNNKN SYQLTSLPQD SQFQQQMEQS 660 TGPLQRQQQQ SQLQQSSLQF LQQSLAQRAQ QQPQVQQLAQ QSMSDQQLQS QLQQKLQQQQ 720 QQQLLSPAGS LLQPQLLQQQ LAHQQNQQLS QLPPSQNHQQ QLSNNLSASV LVQPQQLPMN 780 QPQNQNRPLT GTRAHSNHTD GDAPSCSTSP SSNNCQISPS NFLNRNQQGP AMLMGDSVVE 840 PSSNLVQELH SKSDARIKHE LPISKGPEHL KYNGSMTDQV EASSSGTSYC LDPGNIQQNF 900 SLPTYCLDGD TQSHPRNSLP FVANIDGMAP DTLLSRGYDS QKDLHNLLSN YGGTPRDIET 960 ELSTAAISSQ SFAVPNIPFK PACSNEVGIN EAGVLGNGLW ANQTQRMRTF TKVCYAIYSL 1020 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-174 | 15 | 355 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006452860.1 | 0.0 | auxin response factor 19 isoform X1 | ||||
TrEMBL | A0A067G2H0 | 0.0 | A0A067G2H0_CITSI; Auxin response factor | ||||
STRING | XP_006452860.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2629 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g001728m |