PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g001376m
Common NameCISIN_1g001378mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-X1
Protein Properties Length: 1091aa    MW: 118218 Da    PI: 8.1672
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g001376mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.51.8e-05283299319
           zf-NF-X1   3 kHkCqklCHeGpCppCp 19 
                        +HkC+k+CH GpC+pC+
  orange1.1g001376m 283 RHKCEKICHVGPCGPCR 299
                        8***************6 PP
2zf-NF-X116.32.1e-05345362118
           zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                        CG+H+C+++CH+GpC+ C
  orange1.1g001376m 345 CGHHSCGEICHPGPCGDC 362
                        ****************99 PP
3zf-NF-X123.61.1e-07403421119
           zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                        CG H C +lCH G+CppC 
  orange1.1g001376m 403 CGLHYCDELCHAGNCPPCL 421
                        ******************6 PP
4zf-NF-X118.64e-06498516119
           zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                        CG+H+C++lCH G CppC 
  orange1.1g001376m 498 CGQHSCESLCHSGHCPPCL 516
                        ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578506.71E-7103173No hitNo description
PROSITE profilePS500168.707111172IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590114169IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.465114170IPR001841Zinc finger, RING-type
CDDcd060081.03E-5203264No hitNo description
SMARTSM004380.018226244IPR000967Zinc finger, NF-X1-type
PfamPF014221228243IPR000967Zinc finger, NF-X1-type
CDDcd060087.73E-10271319No hitNo description
SMARTSM004385.3E-4281300IPR000967Zinc finger, NF-X1-type
PfamPF014220.0017283299IPR000967Zinc finger, NF-X1-type
CDDcd060083.10E-9335378No hitNo description
PfamPF014220.07345362IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0078345364IPR000967Zinc finger, NF-X1-type
CDDcd060088.87E-13393441No hitNo description
PfamPF014224.7E-6403420IPR000967Zinc finger, NF-X1-type
SMARTSM004383.3E-5403422IPR000967Zinc finger, NF-X1-type
PfamPF0142218460471IPR000967Zinc finger, NF-X1-type
SMARTSM00438210460494IPR000967Zinc finger, NF-X1-type
CDDcd060081.00E-8488532No hitNo description
PfamPF014229.7E-5498515IPR000967Zinc finger, NF-X1-type
SMARTSM004382.0E-4498517IPR000967Zinc finger, NF-X1-type
CDDcd060081.60E-5545593No hitNo description
PfamPF014222.5555572IPR000967Zinc finger, NF-X1-type
SMARTSM004380.026555573IPR000967Zinc finger, NF-X1-type
PfamPF014220.21608626IPR000967Zinc finger, NF-X1-type
SMARTSM004381.6608628IPR000967Zinc finger, NF-X1-type
PfamPF0142235640666IPR000967Zinc finger, NF-X1-type
SMARTSM004380.08647668IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3301.3E-4884935IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1091 aa     Download sequence    Send to blast
MSSDRRDGTR NPARSARREW VPRGSPARVV NPPPQSINPN TMNGVVENSR NMPTPDDNQH  60
SRNIAPRVQN GQFTNHHRGR ARGENQDKKL PKDLDLPQLL QEIQDKLMKS KVECMICYDM  120
VKRSAPIWSC SSCFSIFHLS CIKKWARAPT SADLSAERSQ GFNWRCPGCQ SVQLTSSKEI  180
RYVCFCGKRT DPTSDFYLTP HSCGEPCGKP LESKISSAGG SEEDLCPHKC VLQCHPGPCP  240
PCKAFAPPRL CPCGKKMITT RCFDRKSVLT CGQHCNKHLE CWRHKCEKIC HVGPCGPCRV  300
LVNASCFCKK KVEVVLCGDM AVKGEVKAEA GVFSCSSTCG KKLSCGHHSC GEICHPGPCG  360
DCELLPSKIK SCFCGKMSLQ EQRKSCLDPI PACSEKCGKP LACGLHYCDE LCHAGNCPPC  420
LAAVTQKCRC GSTSRNVECY RTTGGENFTC EKACGRKKNC GRHRCSERCC PLSSSNSLLS  480
GDWDPHFCQM ACGKKLRCGQ HSCESLCHSG HCPPCLETIF TDLTCACGRT SFPPPLPCGT  540
PPPSCQLPCS VPQPCGHSAS HSCHFGDCPP CSVPIAKECI GGHVVLRNVP CGSKDIRCNK  600
LCGKTRQCGM HACGRTCHPP PCDTACNSEP GSKASCGQVC GAPRRDCRHT CTALCHPSAL  660
CPDVRCEFPF TITCSCGRIT ASVPCDAGGS SSGYSSDTVY EASIVQKLPA PLQPVESTGK  720
KIPLGQRKLM CDDECAKLER KRVLADAFEI TTPNLDALHF GESAVTELLA DLYRRDPKWV  780
LSVEERCKFL VLGKNRGSTN ALKVHVFCPM LKDKRDAVRL IAERWKLAVN PAGWEPKRFI  840
VVHVTPKSKP PPRVIGVKGA TTVNAPHAPV FDPLVDMDPR LVVSFLDLPR ESDISALVLR  900
FGGECELVWL NDKNALAVFS DPARAATATR RLDHGSVYYG AVVVQNVGAP STANAWGGPG  960
TVKEVGAALS SQRGNPWKKA VVQEMAWRED SWGEEESSAG SGDVQASAWK NKEAPIVASI  1020
NRWSVLDSET SSYSSPVSIR TEKPAKQSAS QSNKGGESNA SSANVAGQPA SSFSETELSE  1080
VVDDWEKAYD *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.116441e-151callus| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}.
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006485798.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A067EQJ60.0A0A067EQJ6_CITSI; Uncharacterized protein
STRINGXP_006485798.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1