PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g000448m
Common NameCISIN_1g000279mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HB-other
Protein Properties Length: 1498aa    MW: 169178 Da    PI: 5.6777
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g000448mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.52.6e-193489257
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
           Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                        kR+  t+ qle+Le++++++ yps+++r+eL++klgL++rq ++WF+ rR k+kk
  orange1.1g000448m 34 PKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKK 89
                       69****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-182090IPR009057Homeodomain-like
SuperFamilySSF466898.55E-172491IPR009057Homeodomain-like
PROSITE profilePS5007117.0063090IPR001356Homeobox domain
SMARTSM003891.2E-183294IPR001356Homeobox domain
PfamPF000465.7E-173489IPR001356Homeobox domain
CDDcd000865.25E-133587No hitNo description
SMARTSM005711.1E-21541600IPR018501DDT domain
PROSITE profilePS5082716.644541600IPR018501DDT domain
PfamPF027912.2E-17542597IPR018501DDT domain
PfamPF050661.6E-15723790IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156124.8E-8933975IPR028942WHIM1 domain
PfamPF156137.8E-1311161188IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1498 aa     Download sequence    Send to blast
MEVDSDAEKS NECKKFVVNN NNNNHSNEGQ QGKPKRQMKT PFQLETLEKA YASETYPSES  60
TRAELSEKLG LSDRQLQMWF CHRRLKDKKE KENPPKKMRK NVAVVMPESP IDELRAGAEP  120
GSDYGSGSGS GSSPYLMELR NAVGSSRGLM DDMPIVRRSY ESQQSIMELR AIACVEAQLG  180
EPLREDGPIL GMEFDSLPPD AFGAPIGSSE QQKRSGHPYE SKIYDRYDTK SNKVIPRAHH  240
EYQSLSDQPY FHGSPIDGSR ARTSFLHANE PSSRVHGVQG HVARVRVLSQ QDKPAHIFSS  300
PNGGEDSLLQ RESTSNNRKN AQSTSHPIFG TEDPYLLSDG QTFNNDAEQR MEKKRKCDEA  360
RIAREVEANE IRIQKELERQ DNLRRKNEER MRKEMEKHER ERRKEEERLM RERQREEERS  420
LREQKREMER REKFLQKEYL RAEKRRLKEE LRMEKQAAKR KVAIEKATAR KMAKESMDLI  480
EDEQLELMDL AAASKGLSSI IHLDLETLQN LDSFRDSLSV FPPKTVRLKR PFSVQPWSDS  540
EENVGNLLMV WRFFITFADV LGLWPFTLDE FVQAFHDHES RLLGEIHLAL LKSIIKDIED  600
VARTPSTGLG MNQYCAANPE GGHPRIIEGA YAWGFDIRNW QQLLNPLTWH EIFRQLALSA  660
GFGPKLKKRS SKWANVGDNH EGKGCEDIVS TIRNGSAAEN AFAWMREKGL LLPRRSRHKL  720
TPGTVKFAAF HVLSLEGSKG LTVLELADKI QKSGLRDLTT SKTPEASISV ALTRDTKLFE  780
RIAPSTYCVR PAFRKDPADA EAILAAARKK IRIFENGFLG GEDADDVERD EDSECDVEED  840
PEVEDLATPS SANKNIDRYD EANTCLVSGK DNACNDVALS VQNEVDKGFS SFSLNDSKDA  900
RCQGTADNYV AVEDFGASHL NQENIEIDES KPGESWIQGL AEGDYSHLSV EERLNALVAL  960
IGIANEGNSI RAVLEDRLEA ANALKKQMWA EAQLDKSRLK EENITKLDFT PAMGSKAETH  1020
LASSAAEGGQ SPLPVFVDNK NEASPSLAED QKPMFGSQVF QNHLSEFPNE RTVAVQDPST  1080
GLDNLATQQH GYASKRSRSQ LKAYIAHMAE EMYVYRSLPL GQDRRRNRYW QFATSASRND  1140
PCSGRIFVEL HDGTWRLIDT VEAFDALLSS LDARGTRESH LRIMLQKIET SFKDKVRRNL  1200
QGIDTVGQSW TAIKNEAAEM DVDPDFASSD SPSSTVCGLN SDTLETSSSF RIELGRNEIE  1260
KKAALERFQD FQWWMWRECF NSLSLCASKN EKTRCRQLLV ICDVCLDSYL CEDAHCPSCH  1320
RTFGAVDKSS KFSEHSIQCE EKTKLGLRDI HVSDSSLPLG IRLLKPLSAV IEAYIPPEAL  1380
EASWTDERRK TWGMKLNMSS SAEEVLQLLT ILESGIKRSY LSSNFETTKE LLGSSFTCAD  1440
PWSVPILPWI PKTTAAVALR LLELDASIMY VKPEKPEQFE EDKEANERVV SSYAISF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18289RRLKDKKE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269|PubMed:22694359}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467730.10.0homeobox-DDT domain protein RLT1 isoform X2
SwissprotF4HY560.0RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLA0A067GQX80.0A0A067GQX8_CITSI; Uncharacterized protein
STRINGXP_006449408.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1