PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.397930.1 | ||||||||
Common Name | Csa_4G106850, LOC101216863 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | E2F/DP | ||||||||
Protein Properties | Length: 349aa MW: 38455.9 Da PI: 5.4777 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 87.1 | 1.2e-27 | 93 | 176 | 2 | 71 |
E2F_TDP 2 keksLrlltqkflklleksee.givtlnevakeLvse.................dvknkrRRiYDilNVLealnliekkekneirwkg 71 ++++Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg Cucsa.397930.1 93 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpgnsvaspdqqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 176 689********...*****999********************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF009404 | 2.3E-132 | 3 | 348 | IPR015648 | Transcription factor DP |
Gene3D | G3DSA:1.10.10.10 | 4.4E-46 | 88 | 182 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.1E-34 | 92 | 176 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 3.2E-25 | 94 | 176 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.09E-20 | 95 | 177 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
CDD | cd14458 | 2.93E-43 | 181 | 284 | IPR014889 | Transcription factor DP, C-terminal |
SMART | SM01138 | 2.9E-69 | 183 | 346 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 1.46E-42 | 183 | 295 | No hit | No description |
Pfam | PF08781 | 3.8E-41 | 184 | 291 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MGTRTQQPSR EDDDDDLPSG PGATTISGQS VSMSGSVGSP SSRSEQTMAT PASDNTFLRL 60 NNLDIHGDEA GSQGPTANVK KKRGQRAVGG DKSGRGLRQF SMKVCEKVES KGRTTYNEVA 120 DELVAEFADP GNSVASPDQQ QQYDEKNIRR RVYDALNVLM AMDIISKDKK EIQWKGLPRT 180 SVNDIEELKA ERLGLRNRIE KKAAYLQELE EQYVGLQNLI QRNEQLFNSE NAPSGGVSLP 240 FILVQTRPHA TVEIEISEDM QLVHFDFNST PFELHDDNYV LKAMKFCNRP QCDNTAQNFT 300 PDGGEGSSMS GMYQPPHIPI PSLSNTPVRT PTSPPLPGII KARVKHEH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 4e-36 | 86 | 181 | 1 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681870 | 1e-115 | LN681870.1 Cucumis melo genomic scaffold, anchoredscaffold00035. | |||
GenBank | LN713261 | 1e-115 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011653374.1 | 0.0 | PREDICTED: transcription factor-like protein DPB isoform X1 | ||||
Swissprot | Q9FNY2 | 1e-158 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | A0A0A0KZ86 | 0.0 | A0A0A0KZ86_CUCSA; Uncharacterized protein | ||||
STRING | XP_004154744.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3321 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 1e-149 | Transcription factor DP |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.397930.1 |
Entrez Gene | 101216863 |
Publications ? help Back to Top | |||
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