PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.396040.1
Common NameCsa_2G356690, LOC101218781
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HSF
Protein Properties Length: 375aa    MW: 41685.7 Da    PI: 7.7295
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.396040.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.37.9e-36251172103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg+k+ll++
  Cucsa.396040.1  25 FLSKTYQLVDDPSTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFRKGEKHLLCE 110
                     9*****************************************************************99.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k++
  Cucsa.396040.1 111 IHRRKTA 117
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.9E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-6021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.31E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.1E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.7E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MSVMLDNCEG ILLSLDSHKS VPAPFLSKTY QLVDDPSTDH IVSWGEDDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF RKGEKHLLCE IHRRKTAQPQ  120
LPYTHHHLGN INGPSFFPFS TRVSISPSDS DEQINWCDSP PVPPRATGTG GYSVMGSGII  180
SNNSSTSNYN MMSSVTALSE DNERLRRNNS MLISELSHMR KLYNDIIYFV QNHVKPVSPS  240
NSFPSLLLSH HPSTTNSQKP LNHFLGISPP NTTSTTTNHF SVPGTIVTTH FVSSPTATSK  300
SAVTELDVGE ADNNSCKTKL FGVAISSSKK RMHPDTTTNY VSICSNVSDT NKNSRLILEK  360
GDNLGLNLMP PSTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A8e-22211167112Heat shock factor protein 1
5hdn_A8e-22211167112Heat shock factor protein 1
5hdn_B8e-22211167112Heat shock factor protein 1
5hdn_C8e-22211167112Heat shock factor protein 1
5hdn_D8e-22211167112Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143013.10.0PREDICTED: heat stress transcription factor B-4
SwissprotQ9C6351e-110HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A0A0LKU20.0A0A0A0LKU2_CUCSA; Uncharacterized protein
STRINGXP_004166417.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-105heat shock transcription factor B4
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]