PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.395970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | WOX | ||||||||
Protein Properties | Length: 235aa MW: 26340.3 Da PI: 9.4208 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.3 | 4.1e-21 | 102 | 161 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l+ + r+p+a+++e+++++l +++ ++V++WFqN++a+e++ Cucsa.395970.1 102 TRWNPTQEQIGILEMLYSRgMRTPNAQQIEHITAQLgnygKIEGKNVFYWFQNHKARERQ 161 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 116.3 | 1.4e-37 | 102 | 163 | 4 | 65 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly++G+rtPn+++i++ita+L +yGkie+kNVfyWFQN+kaRerqkq Cucsa.395970.1 102 TRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQ 163 8***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.187 | 97 | 162 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.5E-13 | 97 | 168 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.0E-7 | 99 | 166 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.05E-7 | 102 | 163 | No hit | No description |
Pfam | PF00046 | 9.4E-19 | 102 | 161 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-8 | 103 | 161 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MGFISLHVDF GTNPLSPLAV NAYALLLLNF NNPPPITQPP PPPPSPLSIS RPSSNPIVVL 60 ANQVPPMITA KTLPPLPLPS RISKKKNPCF VQTGVETHPG GTRWNPTQEQ IGILEMLYSR 120 GMRTPNAQQI EHITAQLGNY GKIEGKNVFY WFQNHKARER QKQKRNSLGL PHSPRTPPPP 180 PIIPAFHTGE EDSPYKRKCL YWGFECLVED NGLMCKKEED HDRTLELFPL HPER* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681823 | 1e-160 | LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014. | |||
GenBank | LN713257 | 1e-160 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004142872.1 | 1e-105 | PREDICTED: WUSCHEL-related homeobox 4 | ||||
Swissprot | Q6X7J9 | 1e-48 | WOX4_ARATH; WUSCHEL-related homeobox 4 | ||||
TrEMBL | A0A0A0LNZ2 | 1e-104 | A0A0A0LNZ2_CUCSA; Uncharacterized protein | ||||
STRING | XP_004156369.1 | 1e-104 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6132 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46480.1 | 5e-50 | WUSCHEL related homeobox 4 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.395970.1 |