PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.395410.1

Common Name

Csa_2G354000, LOC101212797

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

AP2

Protein Properties

Length: 697aa MW: 75690.4 Da PI: 6.9634

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.395410.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.9	4e-16	311	370	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g Cucsa.395410.1 311 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 370 78*****************988886678446***********************98 PP
2	AP2	45.8	1.5e-14	413	464	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s ++GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Cucsa.395410.1 413 SVFRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 464 689*************988532...5**********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	7.74E-22	311	378	No hit	No description
Pfam	PF00847	9.7E-13	311	370	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.18E-16	311	380	IPR016177	DNA-binding domain
SMART	SM00380	1.8E-28	312	384	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.203	312	378	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.1E-16	312	379	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.6E-6	313	324	IPR001471	AP2/ERF domain
CDD	cd00018	2.32E-24	413	474	No hit	No description
Pfam	PF00847	3.2E-9	413	464	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.18E-17	413	474	IPR016177	DNA-binding domain
SMART	SM00380	3.5E-33	414	478	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.3E-17	414	472	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	18.624	414	472	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.6E-6	454	474	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence Send to blast
MKSMNDNEDS NNNNNNNNNS WLGFSLSPHM KMEVSSSDHP YNQHHSLHSA SNPFYLSPHF 60 NNNNTEIFYG IPDNSSLHHH SAAASLSVMP LKSDGSLCIM EALSRSQTEG MVPSSSPKLE 120 DFLGGATMGG RGGYFNQNAE SESDREHSFD LLQRPIRQNQ QILIQNSNQY YSGLLPSSIG 180 IGTCDPQILP PDDDGIPCFR NWVSRSHYSA THNTLEHHIT GGDGGGGGTL MNESNGGGSA 240 SIGGMSCGEL QSLSLSMSPG SQSSSFTTSG QISPTGGDGT AVETKKRGPG KLCQKQPVHR 300 KSIDTFGQRT SQYRGVTRHR WTGRYEAHLW DNSCKKEGQT RKGRQVYLGG YDMEEKAARA 360 YDLAALKYWG PSTHINFPLE NYQTELEEMK NMSRQEYVAH LRRKSSGFSR GASVFRGVTR 420 HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGVNAVTN FDISRYDVEK 480 IMASNTLLAG ELARRNKDVE PSNDSSIVPY DSSIVSNNNG GIGIGMEINP DANTANGNAN 540 DWKMALYQNP SHHQQQAAAA TCVADSLDNH QNKSMAVSGG YRNTSFSMAL QDLIGIESLS 600 ANTHGIEDDV SKQVTHFSNS SSLVTSLSSS REGSPDKTNV SMPFGKAPPL MASKLIGATN 660 GVGVGSWYPS PQQLRPTAAA AISMAHLPVF ATWNDT*

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence Send to blast

MKSMNDNEDS NNNNNNNNNS WLGFSLSPHM KMEVSSSDHP YNQHHSLHSA SNPFYLSPHF  60
NNNNTEIFYG IPDNSSLHHH SAAASLSVMP LKSDGSLCIM EALSRSQTEG MVPSSSPKLE  120
DFLGGATMGG RGGYFNQNAE SESDREHSFD LLQRPIRQNQ QILIQNSNQY YSGLLPSSIG  180
IGTCDPQILP PDDDGIPCFR NWVSRSHYSA THNTLEHHIT GGDGGGGGTL MNESNGGGSA  240
SIGGMSCGEL QSLSLSMSPG SQSSSFTTSG QISPTGGDGT AVETKKRGPG KLCQKQPVHR  300
KSIDTFGQRT SQYRGVTRHR WTGRYEAHLW DNSCKKEGQT RKGRQVYLGG YDMEEKAARA  360
YDLAALKYWG PSTHINFPLE NYQTELEEMK NMSRQEYVAH LRRKSSGFSR GASVFRGVTR  420
HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGVNAVTN FDISRYDVEK  480
IMASNTLLAG ELARRNKDVE PSNDSSIVPY DSSIVSNNNG GIGIGMEINP DANTANGNAN  540
DWKMALYQNP SHHQQQAAAA TCVADSLDNH QNKSMAVSGG YRNTSFSMAL QDLIGIESLS  600
ANTHGIEDDV SKQVTHFSNS SSLVTSLSSS REGSPDKTNV SMPFGKAPPL MASKLIGATN  660
GVGVGSWYPS PQQLRPTAAA AISMAHLPVF ATWNDT*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269\|PubMed:21481033}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin. {ECO:0000269\|PubMed:21481033}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	0.0	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	0.0	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004142906.1	0.0	PREDICTED: AP2-like ethylene-responsive transcription factor ANT
Swissprot	Q84Z02	1e-145	CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBL	A0A0A0LKW8	0.0	A0A0A0LKW8_CUCSA; Uncharacterized protein
STRING	XP_004142906.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF916	34	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-128	AP2 family protein

Link Out ? help Back to Top
Phytozome	Cucsa.395410.1
Entrez Gene	101212797

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Kitomi Y, et al. The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling. Plant J., 2011. 67(3): p. 472-84 [PMID:21481033] Li P,Xue H Structural characterization and expression pattern analysis of the rice PLT gene family. Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97 [PMID:21807632] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]