PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.395300.1 | ||||||||
Common Name | Csa_2G352410, LOC101214485 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 205aa MW: 23037.2 Da PI: 8.2926 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.2 | 4.5e-14 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed +l+ +v+ +G tW + + + g++R++k+c++rw++yl Cucsa.395300.1 14 KGPWSPDEDAILKSYVETHGIAgTWIALPTKAGLKRCGKSCRLRWLNYL 62 79******************889************************97 PP | |||||||
2 | Myb_DNA-binding | 54.3 | 3.2e-17 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd + ++++q+G++ W+tIa+ ++ gRt++++k++w++ Cucsa.395300.1 69 GEFTEEEDNVIFNLFNQYGSR-WSTIASQLP-GRTDNDVKNHWNT 111 78*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.236 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.88E-27 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.4E-9 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-12 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.11E-7 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 24.849 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-24 | 70 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.42E-12 | 70 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MGRAPCCEKG KVKKGPWSPD EDAILKSYVE THGIAGTWIA LPTKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FTEEEDNVIF NLFNQYGSRW STIASQLPGR TDNDVKNHWN TKLKKKKKKL 120 FLAAKTQSHL HSQSPLLHTQ ETDFTEIINH TPISCIAALD NSVDQFQIPT VSEPGAGSDS 180 RDQWSSMEPW GCDFPADMIC SMLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-25 | 14 | 116 | 7 | 107 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 118 | KLKKKKKK |
2 | 112 | 119 | LKKKKKKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681823 | 1e-137 | LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014. | |||
GenBank | LN713257 | 1e-137 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004142913.1 | 1e-153 | PREDICTED: transcription factor RAX3 | ||||
Swissprot | Q9SJL7 | 3e-63 | RAX2_ARATH; Transcription factor RAX2 | ||||
TrEMBL | A0A0A0LR01 | 1e-152 | A0A0A0LR01_CUCSA; Uncharacterized protein | ||||
STRING | XP_004170771.1 | 1e-153 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 4e-62 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.395300.1 |
Entrez Gene | 101214485 |
Publications ? help Back to Top | |||
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