PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.395060.1
Common NameCsa_2G351640, LOC101219171
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HSF
Protein Properties Length: 365aa    MW: 41535.6 Da    PI: 4.8954
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.395060.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.26.2e-34461382103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++e++ed+ +++++sws+  nsf+v+d ++f++++Lp+yFkhsnf+SF+RQLn+YgF+kv+ ++         weF+++ F  g+++ll++
  Cucsa.395060.1  46 FLTKTFEMVEDPLTDSIVSWSRARNSFIVWDYHKFSSTLLPRYFKHSNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQRNLLRT 131
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     ikr++++
  Cucsa.395060.1 132 IKRRRHS 138
                     ****876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-3642135IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.31E-3242135IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.9E-5742135IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.5E-3046135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-184669IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-188496IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434085109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-1897109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDELKVKPEE SLVATATASS SSFSSSSSSV TPQPIEGLHD VGPPPFLTKT FEMVEDPLTD  60
SIVSWSRARN SFIVWDYHKF SSTLLPRYFK HSNFSSFIRQ LNTYGFRKVD PDRWEFANEG  120
FLGGQRNLLR TIKRRRHSQQ SIQHHGGTCV ELGQFGLEAD LERLRRDRST LMAELVRLRQ  180
QHQSSRDKIM TMEDRLEKAE SKQKQIMTFL SKALKNPSFI QKFINSNQGR ELRGVEIGRK  240
RRLTASPSVE NLLDENVPVA LKQEELETSE PDIETLLTVN FEDESSIEIA DPVSDLGHSV  300
HEESGIFSHL WVEDLVAGHP EEPTIIVNQS DIDVEVEDLI AEPLDWTEDL QELVDQMGFL  360
RSKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-244413518120Heat shock factor protein 1
5d5u_B6e-244413527129Heat shock factor protein 1
5d5v_B6e-244413527129Heat shock factor protein 1
5d5v_D6e-244413527129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162167RLRRDR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011649528.10.0PREDICTED: heat stress transcription factor A-2
SwissprotP411521e-120HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A0A0LKS10.0A0A0A0LKS1_CUCSA; Uncharacterized protein
STRINGXP_004159544.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82253143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-113heat shock transcription factor A2
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]