PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.394720.1
Common NameCsa_2G350290, LOC101204370
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARR-B
Protein Properties Length: 584aa    MW: 66089 Da    PI: 6.1393
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.394720.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.22.1e-24198251155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r++W+ eLH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Cucsa.394720.1 198 KARVVWSVELHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 251
                     68*******************.9*******************************8 PP
2Response_reg82.41.4e-27191271109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+p+ +++l+++l+k  y ev+++  ++eal ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ G
  Cucsa.394720.1  19 VLVVDDDPTWLKILEKMLKKCSY-EVTTCCLAREALSLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHG 111
                     89*********************.***************999999**********************6644.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ ++el++
  Cucsa.394720.1 112 ACDYLLKPIRMKELRN 127
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363929.0E-1481518IPR017053Response regulator B-type, plant
SuperFamilySSF521727.4E-3616141IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.5E-4416140No hitNo description
SMARTSM004483.9E-3217129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.65718133IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-2419128IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.79E-3020133No hitNo description
SuperFamilySSF466896.9E-18196255IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-28196256IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-21198251IPR006447Myb domain, plants
PfamPF002495.3E-8200250IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MENGFSSPRS DVFPIGLRVL VVDDDPTWLK ILEKMLKKCS YEVTTCCLAR EALSLLRERK  60
DGYDIVISDV NMPDMDGFKL LEHVGLEMDL PVIMMSVDGE TSRVMKGVQH GACDYLLKPI  120
RMKELRNIWQ HVLRKKIQEG RDIEGHDVIE GMHILRNVAD RYDDSQFLRG EEPFSVRKRK  180
DIDKHEDKDF CDTSSTKKAR VVWSVELHQK FVKAVNQIGF DKVGPKKILD LMNVPWLTRE  240
NVASHLQKYR LYLSRLQKEN DPKACFVVGM KPKDSCSKDG DGNFGLRSSL AVPQNDVTNS  300
SFSFSGDNFL LQNVDSIGCE VDRKRIVQEH TTEPKRAASR SVPEPKKTRC PQMKFNNTIH  360
IVEPEGKFAA FDPSNRSCYP WVEAPEIKFK QESKPIVHLE GVNQFPPTVP PRQVQMDQLQ  420
SISSISSGRS ATEKDIASSI ESKPPYSENC SQQRVHLNLP KTPTDSFAGK AKSFNEMNDH  480
FDPNSTTTTP LGKNQNFNPS CISTGLGSGL PFATIDEDLQ GFLLQDGCYP KNLEHQIIEF  540
PDYGDPGIFT EVPTHLYDAM RFGYDYSYDP TEYPVIDEGL FIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-18194256163ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142954.10.0PREDICTED: two-component response regulator ARR11
TrEMBLA0A0A0LQS20.0A0A0A0LQS2_CUCSA; Two-component response regulator
STRINGXP_004142954.10.0(Cucumis sativus)
STRINGXP_004159561.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-129response regulator 11
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]