PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.394330.1 | ||||||||
Common Name | Csa_2G348870, LOC101211011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | YABBY | ||||||||
Protein Properties | Length: 195aa MW: 21595.8 Da PI: 7.5383 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 184.6 | 5.2e-57 | 9 | 178 | 4 | 166 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesast 94 +sseq+ yvqC+ C+til+v+vP++ l++vv vrCG C+ llsvn+ak s ll++ sh + ke +e +v+++ + ++++s+s Cucsa.394330.1 9 ADSSEQIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCAGLLSVNMAKPSfipfDLLTSLSH--NLPKEGFGQEFNVQKHYCLDSLSNSSSSSD 101 679*********************************************998666667777776..445566778888877776666666665555 PP YABBY 95 svssekl..senedeevprvpp...virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166 +s++ +++ed++v +pp v++PPek+qr+Psayn+fikeei+r+ka+nP ++h+eaf +aaknWah+P++ Cucsa.394330.1 102 LLTSYHNiiQNHEDDDVIIIPPtpvVNKPPEKKQRAPSAYNQFIKEEIRRLKAENPAMAHKEAFKTAAKNWAHLPPV 178 54444322455556665444433459*************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.7E-54 | 11 | 179 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.23E-9 | 125 | 177 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.9E-6 | 129 | 177 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 1.40E-5 | 136 | 177 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MSTVEQLLAD SSEQIRYVQC GLCSTILLVN VPYSNLSMVV SVRCGNCAGL LSVNMAKPSF 60 IPFDLLTSLS HNLPKEGFGQ EFNVQKHYCL DSLSNSSSSS DLLTSYHNII QNHEDDDVII 120 IPPTPVVNKP PEKKQRAPSA YNQFIKEEIR RLKAENPAMA HKEAFKTAAK NWAHLPPVNA 180 EGADHMMLRK KNVM* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004143066.2 | 1e-144 | PREDICTED: axial regulator YABBY 4-like | ||||
Swissprot | Q9LDT3 | 1e-51 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A0A0LK60 | 1e-143 | A0A0A0LK60_CUCSA; Uncharacterized protein | ||||
STRING | XP_004143066.1 | 7e-90 | (Cucumis sativus) | ||||
STRING | XP_004172999.1 | 7e-90 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6144 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 5e-51 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.394330.1 |
Entrez Gene | 101211011 |