PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.392160.1 | ||||||||
Common Name | ERAF17 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 204aa MW: 23384.9 Da PI: 10.6132 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.8 | 2.9e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCda+va++ifs++gk y +ss Cucsa.392160.1 9 KRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 79.1 | 1.1e-26 | 82 | 169 | 11 | 98 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ a +++e++ +k+ i++++ +Rh++GedLe+L++keL+qLe+q+ ++++iRskK +++ e+i+ l++k k lqee+ +L+k+l Cucsa.392160.1 82 HSRALFWKTEMDDMKRSISSMEARLRHFVGEDLEPLNVKELKQLERQMSVGIERIRSKKRRIIAEHINLLKRKYKGLQEEHSRLQKRL 169 556778*******************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.394 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.86E-40 | 2 | 72 | No hit | No description |
SuperFamily | SSF55455 | 1.44E-33 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.7E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.8E-23 | 83 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.277 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MGRGKVELKR IENPTSRQVT FSKRRNGLLK KAYELSVLCD AQVALLIFSP SGKAYQFSSH 60 DMDGTLARYR TDVGLPQSNH PHSRALFWKT EMDDMKRSIS SMEARLRHFV GEDLEPLNVK 120 ELKQLERQMS VGIERIRSKK RRIIAEHINL LKRKYKGLQE EHSRLQKRLN QLKDVVVTNS 180 SRNSDANPAS ALEIEFQVDG LLI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 9e-24 | 1 | 82 | 1 | 76 | MEF2C |
5f28_B | 9e-24 | 1 | 82 | 1 | 76 | MEF2C |
5f28_C | 9e-24 | 1 | 82 | 1 | 76 | MEF2C |
5f28_D | 9e-24 | 1 | 82 | 1 | 76 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Regulates floral organ identity and floral meristem determinacy. May be involved in the control of flowering time. {ECO:0000269|PubMed:19820190, ECO:0000269|Ref.8}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB046596 | 0.0 | AB046596.1 Cucumis sativus ERAF17 mRNA for putative MADS-box protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004145150.1 | 1e-149 | PREDICTED: truncated transcription factor CAULIFLOWER D-like isoform X2 | ||||
Swissprot | Q6EU39 | 9e-49 | MADS6_ORYSJ; MADS-box transcription factor 6 | ||||
TrEMBL | Q9AYR8 | 1e-147 | Q9AYR8_CUCSA; Putative MADS-box protein | ||||
STRING | XP_004145150.1 | 1e-148 | (Cucumis sativus) | ||||
STRING | XP_004154125.1 | 1e-148 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26310.1 | 4e-43 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.392160.1 |
Entrez Gene | 101222812 |