PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.391740.1 | ||||||||
Common Name | Csa_1G050130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | B3 | ||||||||
Protein Properties | Length: 392aa MW: 44103.1 Da PI: 7.585 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.1 | 1.8e-14 | 9 | 86 | 14 | 97 |
T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + l++p fa++ ++ +k+++led g++W++++ + + g+ +++GW+ F +++gL++gDf++F ++ + f +v+++ Cucsa.391740.1 9 KKLYFPPLFAATVsRLV---NKKVVLEDALGEQWNITV--SDCEGSLAFQEGWNAFSSEHGLETGDFLIFNYIMDLHF--NVSIY 86 56888999998885444...468***************..*******************************9865555..77776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.197 | 1 | 89 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0019 | 2 | 89 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.8E-16 | 9 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.70E-13 | 9 | 86 | No hit | No description |
Pfam | PF02362 | 5.2E-12 | 9 | 86 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.86E-15 | 10 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MLCIEGSPKK LYFPPLFAAT VSRLVNKKVV LEDALGEQWN ITVSDCEGSL AFQEGWNAFS 60 SEHGLETGDF LIFNYIMDLH FNVSIYTKTG CEKIEFPKKR NMRKRTSTGP LLETTNEGLT 120 NPQASYPSVG SESNMALSQD KRIMAGSQNM NVNWNKRQKS RRNDEGRGLL CETDVVDDSY 180 CFINQNKDMV NPSTKKNTTK IVAEDELNPN CTSSSANAAI IVPLVNDTLV DIKGEKEALP 240 LDTSANKMID KIQCFEQANI KMSVSDTDPC HDKTIEVPFI SAAKYSDTNV ERFCETPLKM 300 VKACQNVPAI CNTPSTITRH DLGSNEKRTS STEHCCSVKQ EYAPNSKEEL PTSLHLSYSR 360 GRRNPEKKKI VLLRDPRKRL WPILYHEMPN VK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 367 | 378 | KKIVLLRDPRKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681932 | 0.0 | LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001. | |||
GenBank | LN713266 | 0.0 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004152587.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0905400 | ||||
TrEMBL | A0A0A0LTQ8 | 0.0 | A0A0A0LTQ8_CUCSA; Uncharacterized protein | ||||
STRING | XP_004152587.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12476 | 28 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 1e-11 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.391740.1 |
Publications ? help Back to Top | |||
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