PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.391740.1
Common NameCsa_1G050130
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 392aa    MW: 44103.1 Da    PI: 7.585
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.391740.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.11.8e-149861497
                    T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3 14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                    + l++p  fa++   ++   +k+++led  g++W++++  + + g+  +++GW+ F +++gL++gDf++F ++ +  f  +v+++
  Cucsa.391740.1  9 KKLYFPPLFAATVsRLV---NKKVVLEDALGEQWNITV--SDCEGSLAFQEGWNAFSSEHGLETGDFLIFNYIMDLHF--NVSIY 86
                    56888999998885444...468***************..*******************************9865555..77776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.197189IPR003340B3 DNA binding domain
SMARTSM010190.0019289IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.8E-16991IPR015300DNA-binding pseudobarrel domain
CDDcd100176.70E-13986No hitNo description
PfamPF023625.2E-12986IPR003340B3 DNA binding domain
SuperFamilySSF1019361.86E-151091IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MLCIEGSPKK LYFPPLFAAT VSRLVNKKVV LEDALGEQWN ITVSDCEGSL AFQEGWNAFS  60
SEHGLETGDF LIFNYIMDLH FNVSIYTKTG CEKIEFPKKR NMRKRTSTGP LLETTNEGLT  120
NPQASYPSVG SESNMALSQD KRIMAGSQNM NVNWNKRQKS RRNDEGRGLL CETDVVDDSY  180
CFINQNKDMV NPSTKKNTTK IVAEDELNPN CTSSSANAAI IVPLVNDTLV DIKGEKEALP  240
LDTSANKMID KIQCFEQANI KMSVSDTDPC HDKTIEVPFI SAAKYSDTNV ERFCETPLKM  300
VKACQNVPAI CNTPSTITRH DLGSNEKRTS STEHCCSVKQ EYAPNSKEEL PTSLHLSYSR  360
GRRNPEKKKI VLLRDPRKRL WPILYHEMPN VK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1367378KKIVLLRDPRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004152587.10.0PREDICTED: B3 domain-containing protein Os01g0905400
TrEMBLA0A0A0LTQ80.0A0A0A0LTQ8_CUCSA; Uncharacterized protein
STRINGXP_004152587.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124762828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-11B3 family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]