PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.391690.1
Common NameCsa_1G050060, LOC101210639
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 474aa    MW: 52825 Da    PI: 4.7258
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.391690.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH382.7e-12143165426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     e C f+++tGtCk+G+ CkF+H+
  Cucsa.391690.1 143 EDCAFYLKTGTCKFGSFCKFNHP 165
                     89********************9 PP
2zf-CCCH29.21.6e-09189211325
                     S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                     + +C+f++rtG Ck+G+ C+++H
  Cucsa.391690.1 189 RTECKFYLRTGGCKFGNACRYNH 211
                     579******************** PP
3zf-CCCH43.26.3e-14234258226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++++rtG CkyG++CkF+H+
  Cucsa.391690.1 234 DEKECPYYMRTGSCKYGANCKFNHP 258
                     6789********************9 PP
4zf-CCCH24.93.6e-08359385127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C++f++tG Ck+ + Ck++H++
  Cucsa.391690.1 359 PGQPECSYFLKTGDCKFKSLCKYHHPK 385
                     5789*********************96 PP
5zf-CCCH33.28.5e-11407431327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +  C +++r+G+Ck+G++CkF H++
  Cucsa.391690.1 407 QNVCTYYRRYGICKFGPSCKFDHPF 431
                     568********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.92E-6139168IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-5139166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.474139167IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-10143165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-4145164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483186214IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-4187213IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-7189211IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5189214IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4192212IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.258232260IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-6233259IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-11234258IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-7234259IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-6238257IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014358385IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375358386IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5360385IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4404431IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511404432IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-5405431IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-8407431IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-4409429IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MEPSEAVSVP NHCEAPPSEF QSSQLHSSVH DPPPFDAQHV PTDDRIHAEL QKLDLKDEKE  60
EPVKDFDGGG EWEVEKNPYE DEGNDTKKID ENDRDRSVRN DDDDDYDDVD EEVDAGDGDG  120
GEVERKGDWR GKSNQYPVRP DAEDCAFYLK TGTCKFGSFC KFNHPVRKKN QVVSEKLKYE  180
DDSTGTANRT ECKFYLRTGG CKFGNACRYN HTRPRALTSP ILELNFLGLP IRPDEKECPY  240
YMRTGSCKYG ANCKFNHPDP TTVAGSESLS GYNNGVPLQG ASQSQITSWT SPRVLNEATT  300
FVPAMISPSQ DQDWNGYQAP IYPSEISVLP PPAYVVNNIA PETDLYSSHQ QVDEYPERPG  360
QPECSYFLKT GDCKFKSLCK YHHPKNRNPK LPTCTLNDKG LPLRPDQNVC TYYRRYGICK  420
FGPSCKFDHP FLPSSSTVGE LEQQPHYGNF STAEGAEMAG GASGNSATVE QSA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004152505.10.0PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X2
SwissprotQ9STM41e-128C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A0A0LU930.0A0A0A0LU93_CUCSA; Uncharacterized protein
STRINGXP_004152505.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-129C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]