PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.388160.1 | ||||||||
Common Name | Csa_7G373460, LOC101220863 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | LBD | ||||||||
Protein Properties | Length: 165aa MW: 18138.7 Da PI: 7.4045 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120.1 | 1.3e-37 | 11 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++apyf +e +++f ++hk+FGasn +kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i +lqqq+++l+a++ Cucsa.388160.1 11 PCGACKFLRRKCVNGCIFAPYFRHELgASHFSAIHKVFGASNASKLLAHLPVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQV 105 7***********************9989******************************************************************* PP DUF260 95 allkee 100 a+l+e+ Cucsa.388160.1 106 AYLREQ 111 *99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.478 | 10 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-35 | 11 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MAASSSSSTP PCGACKFLRR KCVNGCIFAP YFRHELGASH FSAIHKVFGA SNASKLLAHL 60 PVSHRCEAAV TISYEAQARL QDPIYGCVSH IIALQQQVMN LRAQVAYLRE QAAQILLNNY 120 TTRNPTELLY EKSPFCYSDD PFLDLQSWLL AESCSATAPE LEPAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-32 | 2 | 105 | 2 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-32 | 2 | 105 | 2 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681800 | 1e-132 | LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017. | |||
GenBank | LN713255 | 1e-132 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004150342.1 | 1e-119 | PREDICTED: LOB domain-containing protein 29 | ||||
Swissprot | Q9M2J7 | 4e-61 | LBD29_ARATH; LOB domain-containing protein 29 | ||||
TrEMBL | A0A0A0K5D4 | 1e-118 | A0A0A0K5D4_CUCSA; Uncharacterized protein | ||||
STRING | XP_004150342.1 | 1e-119 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24708 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 2e-63 | lateral organ boundaries-domain 29 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.388160.1 |
Entrez Gene | 101220863 |