PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.388100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | FAR1 | ||||||||
Protein Properties | Length: 238aa MW: 27077.8 Da PI: 8.8345 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 94.5 | 1.3e-29 | 68 | 154 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY++YA+++GF +r+++ ++s r+g +++r++vC+keg+r+ + k+ +++r++ra+tr gCka+++vkkek+gkw+vtk++++HnH+l Cucsa.388100.1 68 FYDAYASRLGFIMRVDAFRRSMRDGAVVWRRLVCNKEGFRKFKPKR-SENRKPRAVTREGCKAMVVVKKEKTGKWVVTKFVKDHNHPL 154 9******************************************999.9**************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.6E-28 | 68 | 155 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MNSEQFGFFF SLSLLVDGIP SVLNVVEDPS GKDFARAVTE AEAITSNNSD TEPFVGMEFE 60 SEESVKVFYD AYASRLGFIM RVDAFRRSMR DGAVVWRRLV CNKEGFRKFK PKRSENRKPR 120 AVTREGCKAM VVVKKEKTGK WVVTKFVKDH NHPLIVTPAS ARRNVLLSHT RDEKDAKIRE 180 LTAELQQERK RCAAYQEQLA MILGDMEEHS NHLARNIDNI IQSVRDIESE NNAFSNS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681800 | 0.0 | LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017. | |||
GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004150340.1 | 1e-164 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 | ||||
TrEMBL | A0A0A0KA59 | 1e-163 | A0A0A0KA59_CUCSA; Uncharacterized protein | ||||
STRING | XP_004150340.1 | 1e-164 | (Cucumis sativus) | ||||
STRING | XP_004163163.1 | 1e-164 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 1e-90 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.388100.1 |