PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.387990.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 422aa    MW: 46839.9 Da    PI: 7.7477
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.387990.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS314.52.3e-96554121374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     l++lL+ec  a+s ++l +a+++L +l ++asp+g ++ +R+++yf+ A+a+r+ +s  ++++ l          ++  ++++lf++vsP++kf+
  Cucsa.387990.1  55 LISLLFECGVAISVDNLVEAHRMLLELTQMASPYGqSSAERVVTYFAAAMASRVINSILGICSPLLNY-------KSINNSFQLFYNVSPFIKFA 142
                     5799*******************************889******************777777655333.......33456899************ PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                     hl+ Nq+Ile++++++ vHiiD+di+qGlQWp+LlqaL+ R   + + ++RiT+vg       e l  tg++L+++A++lg++fe+n+ +a ++ 
  Cucsa.387990.1 143 HLASNQTILESLSQCDIVHIIDLDIMQGLQWPPLLQALSMRMdnGRSRHVRITAVGT----TMELLLDTGKQLSDVARHLGLSFEYNP-IAGKVG 232
                     *****************************************9756678*********....99*************************.799*** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     ++++++L+++++E+++Vn+v   h l+d +++  +    ++ l++++ Pkv+ +veq++ + ++ Fl+rf+++l+yysa+fdsl a l +++++r
  Cucsa.387990.1 233 KIDVSMLKLRRNETVVVNWVR--HCLYDATGADWK----TIGLIQQVGPKVFAFVEQDMCY-GGAFLDRFVSSLHYYSAIFDSLGACLRSDDSNR 320
                     ********************9..888888888888....********************99.678****************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                     + vE+ +l rei n++a  g++r   +e++++Wr+ l+++ + +vp+s + ++qa l+l++++ ++g+++ +   g+l l Wkd +L+++S+W+
  Cucsa.387990.1 321 NQVEHSILYREINNILAIGGSSR-SGEEKFREWRSELRKC-LIEVPMSANSMAQAWLMLNMHSnNQGFSLVQGeGGTLKLRWKDTSLYTASSWT 412
                     *********************95.56788*********99.778*******************9****98866155566**************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.38129390IPR005202Transcription factor GRAS
PfamPF035148.1E-9455412IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MSSLLLQPPP LPSSITNPST CNATTMRTRS TMLVTYKNLA PMTRSKDVDD HGLTLISLLF  60
ECGVAISVDN LVEAHRMLLE LTQMASPYGQ SSAERVVTYF AAAMASRVIN SILGICSPLL  120
NYKSINNSFQ LFYNVSPFIK FAHLASNQTI LESLSQCDIV HIIDLDIMQG LQWPPLLQAL  180
SMRMDNGRSR HVRITAVGTT MELLLDTGKQ LSDVARHLGL SFEYNPIAGK VGKIDVSMLK  240
LRRNETVVVN WVRHCLYDAT GADWKTIGLI QQVGPKVFAF VEQDMCYGGA FLDRFVSSLH  300
YYSAIFDSLG ACLRSDDSNR NQVEHSILYR EINNILAIGG SSRSGEEKFR EWRSELRKCL  360
IEVPMSANSM AQAWLMLNMH SNNQGFSLVQ GEGGTLKLRW KDTSLYTASS WTCSNGTVAL  420
N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-119444128379Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818000.0LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004150366.10.0PREDICTED: protein SCARECROW-like
TrEMBLA0A0A0K8I40.0A0A0A0K8I4_CUCSA; Uncharacterized protein
STRINGXP_004150366.10.0(Cucumis sativus)
STRINGXP_004164204.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117873138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-120GRAS family protein