PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.386140.1
Common NameCsa_6G140820, LOC101215053
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 890aa    MW: 97134 Da    PI: 5.4324
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.386140.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.42.5e-0886113127
                     --S---SGGGGTS.--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaHgp 27 
                     +kt+lC++f+r    C++G  C++aHg+
  Cucsa.386140.1  86 WKTSLCSYFRRHSgSCSHGIECRYAHGE 113
                     8**********889************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.2E-1380119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.55E-684118IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-485113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.32485114IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-686113IPR000571Zinc finger, CCCH-type
CDDcd005906.65E-6172237No hitNo description
SuperFamilySSF549282.86E-6173249IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3302.9E-5175237IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168743.087298889IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533352.14E-49301326IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533352.14E-49358497IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533352.14E-49536652IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1502.9E-64550652IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138472.9E-9596653IPR025714Methyltransferase domain
CDDcd024404.78E-7598652No hitNo description
Gene3DG3DSA:3.40.50.1502.9E-64773828IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059589.6E-7774824IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533352.14E-49776838IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PROSITE patternPS012300784816IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1502.9E-64864889IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533352.14E-49873889IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001510Biological ProcessRNA methylation
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 890 aa     Download sequence    Send to blast
MAASSIEETL PTQPQKTSDD HLQTSMDAQD DTENLPVTTA LQPESLTDQS DLQSNGASVA  60
GEKRKRTDPD SDAAKPNPDP STNPLWKTSL CSYFRRHSGS CSHGIECRYA HGEEELRQRP  120
DKSWDPTSER AKKVMKVGEE VKEEEVMMTE VVVDDDDDEV GNDGRDNELT KCLVHLPTKW  180
NSDNLRNYLN ELSVLFKSAK KKKGMTVGFV SFESTEQLRS SVEELQGKII GKKNLKVADV  240
IPRSFEKKIK SSIDCDNSSV SSAAFSLSSN DGEDAGNIND GSSTPNDSVL KGKSAREVVA  300
PLAHMSYSDQ LDHKKNSLLH VLKKLTRNAR KACPHGVSLP EWILKSRDIG GIACSFEGII  360
ESPIINGYRN KCEFSVGYSL EGKPTVGFML GNFREGVTAV EEPENCPNVS RISCKYASTF  420
QEFLQSSSLP IWNRFKNIGF WRQLTVREGR APGKLIDSDN SDASISEVML IVQVCSVGVE  480
SELMTSEFKR LAQAFAEGSV ANSPPLPLTA LVIQHHQGIS NAAPADTPLQ PLTIPKVHSA  540
ELEATNDAVE PRIHDYISNL KFCISPTAFF QVNTLAAEKL YSLAGDWAEL GPDTLLFDIC  600
CGTGTIGLTL AHRVGMVVGI EMNASAVSDA QRNAEINGIN NCKFICAKAE DVIGSLLKEY  660
LKGTKKEEEN VCHSNGNDGT SSASNQNEEI SGAPEKNEET PGASEKSGEN QGAKEKSDEV  720
SETGERNALM SNKDQDPVVN HVPENDANGL ETSEVASEKN GSKHNCCTSE SGTKQFKNVV  780
AIVDPPRGGL HPIVTKVLRT HTHLKRLVYI SCNPESLMAN AIELCTPSSE KIEKGNKNNR  840
GWRNMGCAGL ARHRVKSMPI SEPFRPVKAM AVDLFPHTPH CEMVMLLER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A4e-18554664262376Uncharacterized RNA methyltransferase SP_1029
5xj2_A4e-18554664262376Uncharacterized RNA methyltransferase SP_1029
5xj2_B4e-18554664262376Uncharacterized RNA methyltransferase SP_1029
5xj2_C4e-18554664262376Uncharacterized RNA methyltransferase SP_1029
5xj2_D4e-18554664262376Uncharacterized RNA methyltransferase SP_1029
5zq0_A4e-18554664263377Uncharacterized RNA methyltransferase SP_1029
5zq1_A3e-18554664262376Uncharacterized RNA methyltransferase SP_1029
5zq8_A4e-18554664262376Uncharacterized RNA methyltransferase SP_1029
5zq8_B4e-18554664262376Uncharacterized RNA methyltransferase SP_1029
5zth_A4e-18554664263377Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819220.0LN681922.1 Cucumis melo genomic scaffold, anchoredscaffold00082.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004145739.10.0PREDICTED: zinc finger CCCH domain-containing protein 24
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A0A0KDA70.0A0A0A0KDA7_CUCSA; Uncharacterized protein
STRINGXP_004161655.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88541720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]