PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.385930.1 | ||||||||
Common Name | Csa_6G147520, LOC101212002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TCP | ||||||||
Protein Properties | Length: 135aa MW: 14744.8 Da PI: 10.4767 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 103.5 | 3.5e-32 | 33 | 114 | 8 | 81 |
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa........seceaesssss 81 +++h+kv gRdRR+Rl+ +caar+F+L++eLG ++d++t+eWLl++a+p+i++ltg + sa + c+++ss+ + Cucsa.385930.1 33 PKDRHAKVHGRDRRIRLPPLCAARVFQLTRELGNKTDGQTVEWLLKKAEPSIIALTGKNIASAtldlpgcsKPCDPSSSNTN 114 59********************************************************666665555444333322222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.0E-27 | 33 | 113 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 25.43 | 33 | 87 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MRVKRPTSNS PRNAPKPNSP IASESKLIPS KAPKDRHAKV HGRDRRIRLP PLCAARVFQL 60 TRELGNKTDG QTVEWLLKKA EPSIIALTGK NIASATLDLP GCSKPCDPSS SNTNSTTTSY 120 FEEETLGGNN YAFPM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681935 | 0.0 | LN681935.1 Cucumis melo genomic scaffold, unanchored_scaffold00115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004145813.1 | 7e-96 | PREDICTED: transcription factor TCP7-like | ||||
Swissprot | Q9FMX2 | 2e-27 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A0A0KDC7 | 1e-94 | A0A0A0KDC7_CUCSA; Uncharacterized protein | ||||
STRING | XP_004165860.1 | 3e-95 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 1e-28 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.385930.1 |
Entrez Gene | 101212002 |
Publications ? help Back to Top | |||
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