PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.385830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 177aa MW: 19986.4 Da PI: 9.031 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.3 | 1.1e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++ ++ +G+g +W + +++ g++R++k+c++rw++yl Cucsa.385830.1 14 KGPWSPEEDSKLKHHIETYGTGgNWISLPQKAGLRRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 41 | 4.6e-13 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ +++ G++ W+ Ia+ ++ gRt++++k++w++ Cucsa.385830.1 69 GEFSAEEDRIICTLFATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.671 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.92E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.22E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.869 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-12 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.58E-9 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-24 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDSKLKHHIE TYGTGGNWIS LPQKAGLRRC GKSCRLRWLN 60 YLRPNIKHGE FSAEEDRIIC TLFATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMMG 120 MVSSSSTANT THCAPQAEFD ELEYGGLNSN SFNNGLLFDE KMKMMQQNNN GNEGYNX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-26 | 11 | 117 | 4 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681935 | 2e-67 | LN681935.1 Cucumis melo genomic scaffold, unanchored_scaffold00115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011657019.1 | 1e-100 | PREDICTED: transcription factor RAX1-like | ||||
Swissprot | Q9FKL2 | 5e-74 | MYB36_ARATH; Transcription factor MYB36 | ||||
TrEMBL | A0A1S3CNN7 | 1e-89 | A0A1S3CNN7_CUCME; transcription factor RAX1-like | ||||
STRING | XP_004160092.1 | 1e-99 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 6e-76 | myb domain protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.385830.1 |
Publications ? help Back to Top | |||
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