PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.385130.2

Common Name

Csa_6G152350

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 432aa MW: 49037 Da PI: 6.0872

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.385130.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.9	3.3e-11	201	231	4	34
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 k rr+++NReAAr+sR+RKka++++Le Cucsa.385130.2 201 AKTLRRLAQNREAARKSRLRKKAYVQQLESS 231 6889************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	8.5E-8	194	240	No hit	No description
SMART	SM00338	7.8E-4	198	256	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.772	200	244	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.4E-8	201	236	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-6	202	242	No hit	No description
PROSITE pattern	PS00036	0	205	220	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	8.8E-29	283	358	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MESQRVLEET CSVYGINNNI NLSSTLINNH DGQSFDFGEL EQAIVLQGLG AMNKLDHYEP 60 KQSFLSGKPA ATLEMFPSWP IKYQQTSRGV SLRKREEMLR GSGNYNNSNE EKEMEILGKD 120 EEDEEESEMS NCSAPQQQQQ QHEHNYNTSC FNIINNIQPH QVLMVSTDVS TTALSSQHQY 180 SLQQKRKGCG SISTSQKQLD AKTLRRLAQN REAARKSRLR KKAYVQQLES SRIKLTQLEQ 240 DFQRARSQGI GGGNGNGNVN HGSGALWFDM EYVRWLEEEH RHTMELRGGL EAHLSDTELK 300 VRVDACIYHY DQFFRLKSEA AKFDIFHLIT GMWMSPAERC FLWIGGFRPS DLIKMLMSQL 360 DPITEQQVME IYKLQNSSQQ AEDALSQGLD QLHQSLIDTV AGSPIVDGGI NHMVLAMDKL 420 SSLHGFLHQI F*

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MESQRVLEET CSVYGINNNI NLSSTLINNH DGQSFDFGEL EQAIVLQGLG AMNKLDHYEP  60
KQSFLSGKPA ATLEMFPSWP IKYQQTSRGV SLRKREEMLR GSGNYNNSNE EKEMEILGKD  120
EEDEEESEMS NCSAPQQQQQ QHEHNYNTSC FNIINNIQPH QVLMVSTDVS TTALSSQHQY  180
SLQQKRKGCG SISTSQKQLD AKTLRRLAQN REAARKSRLR KKAYVQQLES SRIKLTQLEQ  240
DFQRARSQGI GGGNGNGNVN HGSGALWFDM EYVRWLEEEH RHTMELRGGL EAHLSDTELK  300
VRVDACIYHY DQFFRLKSEA AKFDIFHLIT GMWMSPAERC FLWIGGFRPS DLIKMLMSQL  360
DPITEQQVME IYKLQNSSQQ AEDALSQGLD QLHQSLIDTV AGSPIVDGGI NHMVLAMDKL  420
SSLHGFLHQI F*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681924	1e-109	LN681924.1 Cucumis melo genomic scaffold, anchoredscaffold00047.
GenBank	LN713265	1e-109	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004149279.2	0.0	PREDICTED: transcription factor TGA6 isoform X1
Swissprot	Q93XM6	1e-127	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A0A0KDN7	0.0	A0A0A0KDN7_CUCSA; Uncharacterized protein
STRING	XP_004165131.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-114	bZIP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.385130.2

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]