PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.384890.1 | ||||||||
Common Name | Csa_6G156050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 258aa MW: 28131.3 Da PI: 9.671 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 110.5 | 2.4e-34 | 44 | 116 | 2 | 73 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssasec 73 +++kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LGfd++sk+++WL+++ak ai++l + + +c Cucsa.384890.1 44 TARKDRHSKVYTSRGLRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKSAIDKLSADlppcntN-----AC 116 789**********************************************************9995553220.....23 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.2E-31 | 44 | 114 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.118 | 46 | 104 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 258 aa Download sequence Send to blast |
MDSNKPFLNS TLEQHSTPTT TMGINTIPGQ NIHIPGGGLV VRSTARKDRH SKVYTSRGLR 60 DRRVRLSAHT AIQFYDVQDR LGFDRPSKAV DWLIKKAKSA IDKLSADLPP CNTNACFSVP 120 VETQTNGIDV VTVFYTASSG NSGPGFDDGF EKIVAWNTNV FGSIPILNQS STAFPQRGPL 180 QSRLESTVPH YTWNDLSVVA AGKRHPNPIQ ENSSPSIPRF ISNELPHLDV HGQFQNDGDG 240 KDNGGKSSSH SSSYSRR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-22 | 51 | 104 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 3e-22 | 51 | 104 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681921 | 1e-177 | LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039. | |||
GenBank | LN713265 | 1e-177 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004149285.1 | 1e-122 | PREDICTED: uncharacterized protein LOC101204399 | ||||
TrEMBL | A0A0A0KF06 | 1e-161 | A0A0A0KF06_CUCSA; Uncharacterized protein | ||||
STRING | XP_008456416.1 | 1e-140 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G15030.3 | 1e-36 | TCP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.384890.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|