PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.383230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 266aa MW: 31418.6 Da PI: 10.1464 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.6 | 6e-18 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll ++v+ +G g+W+++a+ g++R +k+c++rw +yl Cucsa.383230.1 22 KGPWTAEEDRLLMEYVRVHGEGRWNSVAHLAGLRRNGKSCRLRWVNYL 69 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.9e-16 | 75 | 119 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ Cucsa.383230.1 75 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 119 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.557 | 17 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.44E-30 | 19 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-15 | 21 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-17 | 22 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-24 | 23 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.18E-10 | 24 | 69 | No hit | No description |
PROSITE profile | PS51294 | 19.35 | 74 | 124 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-14 | 74 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 75 | 119 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-24 | 77 | 123 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.41E-10 | 79 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MMMMMMDEHF GWGKVAAEGW RKGPWTAEED RLLMEYVRVH GEGRWNSVAH LAGLRRNGKS 60 CRLRWVNYLR PDLKRGQITP HEESIILELH ARWGNRWSTI ARSLPGRTDN EIKNYWRTHF 120 KKKAKVTSSR NEKPNARFLR KHQYHQQQQQ QQQQYWELLR QQQHRELLRQ QQQLNRQPAM 180 KAEPINNSQP QIRQESCTGI ISNFNPQIDH DQPGSLLLSL PEAISMEDHQ LWDGLLWNFE 240 DFHTNLTPNS AFGKANVHNL VTPFC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-28 | 12 | 124 | 17 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681844 | 0.0 | LN681844.1 Cucumis melo genomic scaffold, anchoredscaffold00057. | |||
GenBank | LN713259 | 0.0 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004147192.1 | 0.0 | PREDICTED: transcription factor MYB24-like | ||||
TrEMBL | A0A1S3CE84 | 1e-170 | A0A1S3CE84_CUCME; myb-related protein 305-like | ||||
STRING | XP_004147192.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 4e-75 | myb domain protein 79 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.383230.1 |