PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.380590.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GeBP
Protein Properties Length: 173aa    MW: 20178.2 Da    PI: 5.1611
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.380590.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57349.89.8e-16451113397
          DUF573  33 didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk..aksgkepsfskehdqkifelskkiWg 97 
                       + fy+fvk+++s++vs+sql++K+ rLKk+f  ++++   +++k  +fs ++++k fels+ iWg
  Cucsa.380590.1  45 SKELFYHFVKGKLSVEVSNSQLSDKVYRLKKRFILMKANksCDNNKMRTFSDSNYKKLFELSSNIWG 111
                     4577*****************************9887775678888899*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.6E-1342111IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MATSFSDAET EDNYLESKFE SPQISSSNNS KCGRQEDERE NGSYSKELFY HFVKGKLSVE  60
VSNSQLSDKV YRLKKRFILM KANKSCDNNK MRTFSDSNYK KLFELSSNIW GDEENPKLSE  120
DPSARGFYND EKVFQMALEK LKVDITFIPP HDLQNIRKEW EDVMSARNGY ELX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819111e-132LN681911.1 Cucumis melo genomic scaffold, anchoredscaffold00128.
GenBankLN7132641e-132LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0A0L8331e-108A0A0A0L833_CUCSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.13e-07DNA-binding storekeeper protein-related transcriptional regulator