PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.379880.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 267aa    MW: 30158.7 Da    PI: 9.041
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.379880.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-1761106148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++Tt+E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
   Cucsa.379880.1  61 RGKMTTQEERLVLELHAKWGNR-WSKIARKLP-GRTDNEIKNYWRTHM 106
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.5533555IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.7E-94167IPR009057Homeodomain-like
SuperFamilySSF466896.68E-2241110IPR009057Homeodomain-like
PROSITE profilePS5129427.06656110IPR017930Myb domain
SMARTSM007171.2E-1660108IPR001005SANT/Myb domain
PfamPF002491.1E-1561105IPR001005SANT/Myb domain
CDDcd001671.35E-1163106No hitNo description
Gene3DG3DSA:1.10.10.607.7E-2068107IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDRTRRHSAD MLCGLIWRSK MGFHCKSFRF EGGGRQLIGL NRTGKSCRLR WVNYLHPGLK  60
RGKMTTQEER LVLELHAKWG NRWSKIARKL PGRTDNEIKN YWRTHMRKKA QEKRRGLSAS  120
SSSSSSSSSS SISSSSSSFN NPAKEFPADT GPVKFFDSGG SEISASSSTK KKIEENKEVG  180
GDQNGYTMDD IWKDIEVSNH ESLIMNQDVY SEDNNFSCPA LNSAASSWED YCCGDSLWKM  240
EEEESKLIFS GWPCLGLAQP NQNFFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-184211037105MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-174211091159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-174211091159MYB PROTO-ONCOGENE PROTEIN
1h8a_C6e-184211060128MYB TRANSFORMING PROTEIN
1mse_C4e-184211037105C-Myb DNA-Binding Domain
1msf_C4e-184211037105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN8114400.0LN811440.1 Lilium hybrid division I mRNA for MYB48, cultivar Prato.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011657252.10.0PREDICTED: transcription factor MYB48 isoform X2
SwissprotQ9LX828e-63MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A1S3BJJ41e-180A0A1S3BJJ4_CUCME; transcription factor MYB48-like isoform X2
STRINGXP_004148216.11e-166(Cucumis sativus)
STRINGXP_004166626.11e-166(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43783359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.41e-66myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]