PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.379650.1

Common Name

Csa_6G301060, LOC101220383

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WOX

Protein Properties

Length: 194aa MW: 22369.9 Da PI: 6.9668

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.379650.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.8	1e-19	9	68	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Lee +++ ++p+a+++++++++l +++ ++V++WFqN++a++++ Cucsa.379650.1 9 SRWCPTPEQVMILEEIYRNgLKTPNATQIQHITSHLsfygKIEGKNVFYWFQNHKARDRQ 68 7***************99***********************************996 PP
2	Wus_type_Homeobox	117.2	7.7e-38	9	69	4	64
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +RW+PtpeQ++iLee+y++Gl+tPn+ +iq+it++L+ yGkie+kNVfyWFQN+kaR+rqk Cucsa.379650.1 9 SRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYWFQNHKARDRQK 69 8***********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.62	4	69	IPR001356	Homeobox domain
SMART	SM00389	4.6E-4	6	73	IPR001356	Homeobox domain
Pfam	PF00046	2.3E-17	9	68	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-11	9	69	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-7	10	68	IPR009057	Homeodomain-like
CDD	cd00086	4.91E-4	10	69	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MSPSSITPSR WCPTPEQVMI LEEIYRNGLK TPNATQIQHI TSHLSFYGKI EGKNVFYWFQ 60 NHKARDRQKL RRKLYKQLQQ HHFFMKRQRF DDHQHDHHHF FQYFLPHHVP QLLPQLPSPS 120 SLQREVGEEE AATEVEGGGG RRWMGGDEGT TVEEEDGETT CGNGTLRTLE LFPVRASWVK 180 EEEGTSGNGG WGN*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in the lateral sepal axis-dependent development of flowers, probably by regulating the proliferation of L1 cells at the lateral region of flower primordia. Required for the formation of the margin cells of the first and second whorl organs. {ECO:0000269\|PubMed:11751640, ECO:0000269\|PubMed:15169755}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681922	0.0	LN681922.1 Cucumis melo genomic scaffold, anchoredscaffold00082.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004148244.1	1e-144	PREDICTED: WUSCHEL-related homeobox 3
Swissprot	Q9SIB4	6e-35	WOX3_ARATH; WUSCHEL-related homeobox 3
TrEMBL	A0A0A0KHT6	1e-143	A0A0A0KHT6_CUCSA; Uncharacterized protein
STRING	XP_004148244.1	1e-143	(Cucumis sativus)
STRING	XP_004168470.1	1e-143	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10632	29	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	2e-39	WOX family protein

Link Out ? help Back to Top
Phytozome	Cucsa.379650.1
Entrez Gene	101220383

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Niu L, et al. LOOSE FLOWER, a WUSCHEL-like Homeobox gene, is required for lateral fusion of floral organs in Medicago truncatula. Plant J., 2015. 81(3): p. 480-92 [PMID:25492397] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Guan C, et al. Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis. Curr. Biol., 2017. 27(19): p. 2940-2950.e4 [PMID:28943086]