PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.378700.2 | ||||||||
Common Name | Csa_3G748220, LOC101221983 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 241aa MW: 27205.6 Da PI: 7.0603 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.1 | 8.3e-20 | 66 | 119 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++++eqle Le+ F+++ +++ +++++L+k+lgL+ rq+ vWFqNrRa++k Cucsa.378700.2 66 KKKRLSSEQLESLERSFQEEIKLDPDRKQKLSKELGLQPRQIAVWFQNRRARWK 119 45679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 119.7 | 1.6e-38 | 65 | 157 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekk+rls+eq+++LE+sF+ee kL+p+rK++l++eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+++da+++e+++L++ev +L++ l+e Cucsa.378700.2 65 EKKKRLSSEQLESLERSFQEEIKLDPDRKQKLSKELGLQPRQIAVWFQNRRARWKAKQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRE 157 69**************************************************************************************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.71E-19 | 55 | 123 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.167 | 61 | 121 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-17 | 63 | 125 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.1E-17 | 66 | 119 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.93E-17 | 66 | 122 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-21 | 68 | 128 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.6E-5 | 92 | 101 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 96 | 119 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.6E-5 | 101 | 117 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.7E-8 | 121 | 155 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010434 | Biological Process | bract formation | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MEWATGSFRP FVSRAPESSF GFLYNYNLEQ FQGVDVKHSA MAGASETVLQ GLVPGMDMNS 60 YGNLEKKKRL SSEQLESLER SFQEEIKLDP DRKQKLSKEL GLQPRQIAVW FQNRRARWKA 120 KQLEHLYDTL KQEFDAISRE KHKLQEEVMK LKSMLRELQA ARNQVSTVYT DLSGEETVES 180 TSVGAGCSSK PRPVAAAAAV AAANHYTTPP EQCNYVFNTE EYNPMSPAFW GSLPSSYHPQ 240 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 121 | RRARWKAKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00486 | DAP | Transfer from AT5G03790 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM095652 | 0.0 | KM095652.1 Cucumis sativus multicellular trichome development class I homeodomain-leucine zipper transcription factor (Gl) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004138002.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-22-like isoform X2 | ||||
Refseq | XP_008442781.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-22-like isoform X2 | ||||
Swissprot | Q9LZR0 | 6e-52 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A0A0LED8 | 1e-179 | A0A0A0LED8_CUCSA; Uncharacterized protein | ||||
TrEMBL | A0A1S3B777 | 1e-179 | A0A1S3B777_CUCME; homeobox-leucine zipper protein ATHB-22-like isoform X2 | ||||
STRING | XP_004138002.1 | 1e-180 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 1e-39 | homeobox 51 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.378700.2 |
Entrez Gene | 101221983 |
Publications ? help Back to Top | |||
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