PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.378680.1
Common NameCsa_3G748240, LOC101222223
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Trihelix
Protein Properties Length: 405aa    MW: 46740.5 Da    PI: 6.4673
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.378680.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.61.9e-2492191186
        trihelix   1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 
                     +Wt+ +v++Li+a+ +++++ +++              +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++  +
  Cucsa.378680.1  92 KWTDMMVRLLITAVFYIGDEGGSEPvdhvgkkkpvgllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACKVVENQTL 186
                     7*******************998755667778899999**********************************************559******** PP

        trihelix  82 fdqle 86 
                     +d++e
  Cucsa.378680.1 187 LDSME 191
                     99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.7E-2190216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MNSSMLGLEL PLHQNPTNPT NPHQLHHPPM VSYVQHDPHH HQQPPSVSVK YPFPTKAKPQ  60
QSNLSDDEEQ GFAADDSNGD GKKKISPWQR MKWTDMMVRL LITAVFYIGD EGGSEPVDHV  120
GKKKPVGLLQ KKGKWKSVSR AMMEKGFYVS PQQCEDKFND LNKRYKRVND ILGKGTACKV  180
VENQTLLDSM ELTPKTKEEV RKLLNSKHLF FREMCAYHNT CRHSTTHPSI AAGEGSKSGD  240
EEEEEEEEEE SEEEEEDEET EGRQEEEEET ESRKRARKGG MITAGMQQLS AEVMGVISDG  300
GRSPWEKKQW MKSRLIQLEE QQVSWQTQAF ELEKQRLKWV KFRSKKERDM ERAKLENEKR  360
MLENERMMLM VKKNELDLMG MQHYQQQQQQ HSSNKRGDPS SITG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138003.10.0PREDICTED: uncharacterized protein DDB_G0290301
TrEMBLA0A0A0LDU60.0A0A0A0LDU6_CUCSA; Uncharacterized protein
STRINGXP_004138003.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-110sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]