PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.378450.1 | ||||||||
Common Name | CBF3, Csa_3G751440 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 205aa MW: 22620.8 Da PI: 8.4827 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.8 | 2.7e-13 | 36 | 85 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ykGVr++ +g+Wv+e+r p +k+ +f++g+f +++ Aa a++ +++++ge Cucsa.378450.1 36 IYKGVRQR--NGKWVCELRRP---NKKSSFWVGTFCSPKRAAIAYDVVALAIKGE 85 69***975..6*********8...347**********************999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.55E-18 | 35 | 93 | No hit | No description |
Pfam | PF00847 | 8.6E-9 | 35 | 85 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.699 | 36 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-14 | 36 | 92 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.7E-21 | 36 | 93 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.3E-15 | 36 | 98 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MSSSSSSSTN DHLPPPTTVA KRKAGRKKFQ ETRHPIYKGV RQRNGKWVCE LRRPNKKSSF 60 WVGTFCSPKR AAIAYDVVAL AIKGESVPLN FPNFAHSFPR VMSSSSSISD IRAMAIKTAE 120 TFTSGDILTP LSLSSPSSLS LCSLMSEEKV VGPNYFWDEE EVFNMPAIIA GMAEGLIITP 180 PGMKKEFDWE DSENTIELSL WSHE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ900769 | 0.0 | JQ900769.1 Cucumis sativus CBF3 protein (CBF3) mRNA, complete cds. | |||
GenBank | KT737743 | 0.0 | KT737743.1 Cucumis melo CRT/DRE-binding factor 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001267604.1 | 1e-150 | uncharacterized protein LOC101209920 | ||||
TrEMBL | A0A140DCV7 | 1e-148 | A0A140DCV7_CUCME; CRT/DRE-binding factor 3 | ||||
TrEMBL | I3WEU3 | 1e-148 | I3WEU3_CUCSA; CBF3 protein | ||||
STRING | XP_004167927.1 | 1e-149 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25490.1 | 2e-37 | C-repeat/DRE binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.378450.1 |
Entrez Gene | 101209920 |
Publications ? help Back to Top | |||
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