PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.377670.1 | ||||||||
Common Name | Csa_7G170600, LOC101222754 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB_related | ||||||||
Protein Properties | Length: 82aa MW: 8979.78 Da PI: 7.6851 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.8 | 1e-07 | 10 | 54 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 g WT + + +a + + + +W +a+ +g g+t++++k ++ Cucsa.377670.1 10 GTWTVTQNKAFEKALAVYDQDtpdRWLNVAKAVG-GKTAEEVKRHY 54 79*****************99*************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 9.7E-7 | 8 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-6 | 10 | 54 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.35E-12 | 10 | 66 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.1E-5 | 10 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.14E-6 | 11 | 54 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
MASMSSHGSG TWTVTQNKAF EKALAVYDQD TPDRWLNVAK AVGGKTAEEV KRHYALLVED 60 VKFIESGQVP FPYRTSGGGN QX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-34 | 5 | 79 | 3 | 79 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681800 | 1e-122 | LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017. | |||
GenBank | LN713255 | 1e-122 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004151125.2 | 3e-55 | PREDICTED: protein RADIALIS-like 1 | ||||
Swissprot | Q58FS3 | 2e-34 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A0A0K348 | 6e-54 | A0A0A0K348_CUCSA; Uncharacterized protein | ||||
STRING | XP_004151125.1 | 9e-55 | (Cucumis sativus) | ||||
STRING | XP_004166680.1 | 9e-55 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 9e-36 | RAD-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.377670.1 |
Entrez Gene | 101222754 |