PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.377640.1 | ||||||||
Common Name | Csa_7G169070, LOC101220234 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB_related | ||||||||
Protein Properties | Length: 80aa MW: 8920.05 Da PI: 8.9571 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.5 | 4e-10 | 10 | 58 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 g WT+ + + +a +++ ++ +W +a+ +g g+t++++k ++q +l Cucsa.377640.1 10 GVWTAKQNKAFEEALAMYDKDtpdRWLNVAKAIG-GKTEEEVKRHYQLLL 58 78********************************.************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.615 | 7 | 62 | IPR017884 | SANT domain |
SMART | SM00717 | 1.6E-8 | 8 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.24E-13 | 10 | 66 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.9E-8 | 10 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-6 | 11 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.80E-7 | 12 | 58 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 80 aa Download sequence Send to blast |
MASLSAHGSG VWTAKQNKAF EEALAMYDKD TPDRWLNVAK AIGGKTEEEV KRHYQLLLED 60 VKHIESGKVP FPYRSSRSN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-33 | 5 | 79 | 3 | 79 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681800 | 1e-105 | LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017. | |||
GenBank | LN713255 | 1e-105 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004151116.1 | 1e-53 | PREDICTED: protein RADIALIS-like 1 | ||||
Swissprot | Q58FS3 | 7e-33 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A0A0K344 | 2e-52 | A0A0A0K344_CUCSA; Uncharacterized protein | ||||
STRING | XP_004151116.1 | 4e-53 | (Cucumis sativus) | ||||
STRING | XP_004170039.1 | 4e-53 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 5e-34 | RAD-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.377640.1 |
Entrez Gene | 101220234 |