PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.368500.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 684aa    MW: 74451 Da    PI: 6.1563
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.368500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.6e-06275295526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G C+  d+C +aHg
  Cucsa.368500.1 275 PCPEFRK-GACPKADSCEYAHG 295
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484037.93E-1568158IPR020683Ankyrin repeat-containing domain
SMARTSM002482.0E-477107IPR002110Ankyrin repeat
PROSITE profilePS500889.45877101IPR002110Ankyrin repeat
PfamPF127962.5E-977144IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.71677157IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.208.3E-1578159IPR020683Ankyrin repeat-containing domain
CDDcd002041.63E-1379175No hitNo description
SMARTSM002480.62112144IPR002110Ankyrin repeat
PROSITE profilePS500889.11112147IPR002110Ankyrin repeat
SMARTSM003568.1E-5270296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.643270297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4275296IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.019305329IPR000571Zinc finger, CCCH-type
SMARTSM0035630305328IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MCSGSKNKVA STNSAMEARF LKLSDGGLFS ENSILLELSA SDDVEGFKRE VEEKDLDVDE  60
PSCWYGRGIG SKKMGFEERT PLMIAAMFGS SKVVKYLIET GKVDVNRACG SDLTTALHCA  120
TAGGSCSSLE TIKLLLDGSA DVDCVDAYGR KPVDLIVSAC RMVLNSGRKA MEMLLRGDGM  180
AGEADLSLYL EEDQQKITAS QFSKEGSDKK EYPVDVSLPD INSGIYGTDD FRMYTFKVKP  240
CSRAYSHDWT ECPFVHPGEN ARRRDPRKYP YSCVPCPEFR KGACPKADSC EYAHGVFESW  300
LHPAQYRTRL CKDETGCTRK VCFFAHKPDE LRPVYASTGS GMPSPRSLSS NTGDMSTMSP  360
LALGSSSLSL PTTSTPPMSP LASVSSPKNG NLWQNKINLT PPALQLPGSR LKATLSARDL  420
DLEMELLGLE KNVSQLQHQQ QLIDEISRLS SPYWNADVSR TAELKPSNLD DMFGSLDSSL  480
LSQLQGASLK TPISAQVQSP TGLQMRQNMS QLRASYPANN LSSSPVKKPS SFGFDSSSAV  540
AAAVMNSRSA AFAKRSQSFI DRAAVSRLPG FTGAANSAAT MSSHLSDWNS PDGKLDWGMN  600
GTDLNKLKKS ASFGIRNGTP TFAPPVEEPD VSWVNSLVKD VPSESFGLFG AEKRPYNLKR  660
EINEMLPSWM EQQLYAEQEQ IVA*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1348120.0KF134812.1 Cucumis melo cultivar New Silverlit zinc finger CCCH domain-containing protein 29-like protein mRNA, complete cds.
GenBankLN6819020.0LN681902.1 Cucumis melo genomic scaffold, anchoredscaffold00106.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148184.10.0PREDICTED: zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLU3R7570.0U3R757_CUCME; Zinc finger CCCH domain-containing protein 29-like protein
STRINGXP_004163130.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein