PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.366830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | B3 | ||||||||
Protein Properties | Length: 153aa MW: 16986.4 Da PI: 7.4594 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.5 | 1.4e-19 | 65 | 149 | 1 | 91 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f++ l++s+v ++ ++ lp f++++ ++++ t+tlede gr ++vk+i k++ l++GW++F a++L egD++vF+l+g ++f+ Cucsa.366830.1 65 FVQSLVRSHVASLFLMGLPGAFCKSYL--PARDSTMTLEDEAGRHFQVKYIAHKTG----LSAGWRQFSAAHKLLEGDVLVFQLVGPTKFK 149 88999********************94..345669***************655555....************************9977763 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.9E-20 | 57 | 150 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-21 | 59 | 151 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.39E-24 | 63 | 150 | No hit | No description |
SMART | SM01019 | 4.1E-16 | 65 | 151 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.2E-17 | 65 | 149 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.155 | 65 | 152 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
YSCKELLTSN GATFSFSPIV NHDYCCFEQN KAAFDEQCSP GEFKSSAVMR ALEVRSNLEQ 60 EFPSFVQSLV RSHVASLFLM GLPGAFCKSY LPARDSTMTL EDEAGRHFQV KYIAHKTGLS 120 AGWRQFSAAH KLLEGDVLVF QLVGPTKFKV IY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681913 | 1e-114 | LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045. | |||
GenBank | LN713265 | 1e-114 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004148056.1 | 3e-85 | PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1 | ||||
Refseq | XP_011649348.1 | 2e-85 | PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X2 | ||||
TrEMBL | A0A0A0LLY8 | 6e-84 | A0A0A0LLY8_CUCSA; Uncharacterized protein | ||||
STRING | XP_004148056.1 | 1e-84 | (Cucumis sativus) | ||||
STRING | XP_004161736.1 | 1e-84 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1007 | 33 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 2e-30 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.366830.1 |