PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.366590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | B3 | ||||||||
Protein Properties | Length: 293aa MW: 33950.9 Da PI: 8.475 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.5 | 5.7e-14 | 11 | 103 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffk+ ++ +l+++ l lp+kf++++ ++ tl ++g +W+++l ++ +g++ + +GW eFv+ ++ g f+vF+l+g +f +v Cucsa.366590.1 11 FFKIVLH-QNLTQQKLDLPNKFVKNNAHS-LLFNNATLSLPDGSKWNFQL--TRLDGKICFLRGWPEFVNFYAVQPGYFLVFQLKGICCF--NVL 99 5666655.4555666********888544.4556899999**********..99999988888*********************9999*9..999 PP EE-S CS B3 96 vfrk 99 +f++ Cucsa.366590.1 100 IFDT 103 9987 PP | |||||||
2 | B3 | 58.8 | 9.8e-19 | 195 | 280 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl..iyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f ++ ps+ + ++l+lp+ f e++ k es++++le +gr W+v + ++ +++r+ l++GWk+F+ +n+L+egD++vF+l+++ Cucsa.366590.1 195 FMVTMRPSYIQTGNCLSLPRIFSERYI-K--ESVDVKLEVGDGRIWKVWCgvRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNK 280 778999******************994.3..5899*************98667778888899***********************9864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.9E-18 | 4 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-18 | 5 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.69E-15 | 9 | 102 | No hit | No description |
PROSITE profile | PS50863 | 10.771 | 10 | 104 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-10 | 11 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-11 | 11 | 103 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-20 | 189 | 280 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.51E-20 | 190 | 280 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.98E-20 | 193 | 283 | No hit | No description |
SMART | SM01019 | 9.6E-9 | 195 | 285 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.83 | 195 | 292 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.6E-17 | 195 | 280 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MGLFTSPNPH FFKIVLHQNL TQQKLDLPNK FVKNNAHSLL FNNATLSLPD GSKWNFQLTR 60 LDGKICFLRG WPEFVNFYAV QPGYFLVFQL KGICCFNVLI FDTSATEIDY PMRRLPVIVP 120 KSESDDEGES IQILHEESDE HLPISEYNER EDGRSSPESM RPMNPRKTQQ VLTENQLVVV 180 RRASSFKCRT KNPSFMVTMR PSYIQTGNCL SLPRIFSERY IKESVDVKLE VGDGRIWKVW 240 CGVRWAFTRR RTELKGGWKR FAVDNELEEG DICVFELMNK TPKREGERSL NN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681913 | 1e-130 | LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045. | |||
GenBank | LN713265 | 1e-130 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004148065.1 | 1e-160 | PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2 | ||||
TrEMBL | A0A0A0LM04 | 1e-159 | A0A0A0LM04_CUCSA; Uncharacterized protein | ||||
STRING | XP_004148065.1 | 1e-160 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-33 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.366590.1 |