PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.366520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | B3 | ||||||||
Protein Properties | Length: 335aa MW: 39137.4 Da PI: 10.4197 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47 | 4.7e-15 | 12 | 104 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffkv ++ l+++ l lp+kf++++gg+ ++tl ++g W+++l +k +g++ +++GW eFv+ ++ g f+vF+l+g +f +v Cucsa.366520.1 12 FFKVILHQT-LTQQKLDLPNKFVKNNGGS-LLFNKVTLFLPDGANWKIQL--KKLDGKICFRRGWPEFVQFYSVQPGHFLVFQLKGICCF--NVL 100 667665554.55556********999877.56679***************..********************************999999..999 PP EE-S CS B3 96 vfrk 99 +f++ Cucsa.366520.1 101 IFDT 104 9987 PP | |||||||
2 | B3 | 60.2 | 3.6e-19 | 219 | 307 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl..iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f ++ ps+ + + l+lp++f e++ k es++++le +gr W+v + ++ +++r+ l++GWk+F+ +n+LkegD++vF+l+++++ Cucsa.366520.1 219 FMVTMRPSYIQTGNYLSLPRRFGEKYI-K--ESVDVKLEVGDGRCWRVWCgvRWAFTRRRTELKGGWKRFAVDNELKEGDICVFELMKKNGS 307 778999********************4.3..5899*************88667777888899***********************9975443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.87E-20 | 5 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-20 | 5 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.08E-16 | 10 | 103 | No hit | No description |
PROSITE profile | PS50863 | 11.829 | 11 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.5E-12 | 12 | 104 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-15 | 12 | 105 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-22 | 212 | 305 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.12E-21 | 214 | 306 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.12E-21 | 217 | 306 | No hit | No description |
PROSITE profile | PS50863 | 12.971 | 219 | 316 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-17 | 219 | 307 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-12 | 219 | 315 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MANLFRSPNP HFFKVILHQT LTQQKLDLPN KFVKNNGGSL LFNKVTLFLP DGANWKIQLK 60 KLDGKICFRR GWPEFVQFYS VQPGHFLVFQ LKGICCFNVL IFDTSATEID YPIRRLLDLI 120 PKSRNEDEEE SIQILNEMVL KKRRMEKEEE TPPAYRSLRG LKKMMRKNAK VKIAKNRGIT 180 SDEDEGDLEM DNSRRQSNHR GIVKKRASWF KSRRNNPSFM VTMRPSYIQT GNYLSLPRRF 240 GEKYIKESVD VKLEVGDGRC WRVWCGVRWA FTRRRTELKG GWKRFAVDNE LKEGDICVFE 300 LMKKNGSVLT TSFIGIVSIQ EVYTCFRIER VDST* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681913 | 0.0 | LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008457957.2 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A0A0LMR6 | 0.0 | A0A0A0LMR6_CUCSA; Uncharacterized protein | ||||
STRING | XP_008457957.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-38 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.366520.1 |