PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.366510.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 305aa    MW: 35088.2 Da    PI: 9.8988
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.366510.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.62e-1726121299
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                     fkv    d+lk++ l +p+kf++e+g+k   + ++ l+ ++g++W+v l+ ++++ r++l  GW++ v    +k+g f+vFk+++   +f  +v 
  Cucsa.366510.1  26 FKVV-LDDALKEQKLEIPRKFVREYGLKALLKDQICLKVRDGKEWNVGLTKSNNGTRVWLHYGWEKLVGFYSVKSGYFLVFKYENPsPSF--YVV 117
                     4544.478999999**************99999****************9999******************************9865555..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f++
  Cucsa.366510.1 118 IFDH 121
                     9987 PP

2B356.64.6e-18205297495
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     +  ps+ ++++ l++pk+fa+ + ++  + ++++l+ ++gr W+ ++ +  + k +r ++ + GWk+F ++n+L +gDf+vF+++g+++++  +k
  Cucsa.366510.1 205 KIWPSHIHRTKSLSIPKNFADMNLED--SITKIILKASDGRMWSGECGFywTPKMQRmTFYKYGWKSFIRDNNLAVGDFCVFEMTGKNSTTVAFK 297
                     5668999999**********988433..3358************9995445555555577789********************998877766665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-1921122IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.63E-1821121IPR015300DNA-binding pseudobarrel domain
CDDcd100176.51E-2123120No hitNo description
PROSITE profilePS5086312.16724122IPR003340B3 DNA binding domain
SMARTSM010192.3E-1325122IPR003340B3 DNA binding domain
PfamPF023628.4E-1526121IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-20198302IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.84E-19199294IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.338202300IPR003340B3 DNA binding domain
SMARTSM010191.5E-7203300IPR003340B3 DNA binding domain
PfamPF023622.1E-16206297IPR003340B3 DNA binding domain
CDDcd100171.18E-17208302No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MASSSHYRSN SIVKQSSGAL HNPHFFKVVL DDALKEQKLE IPRKFVREYG LKALLKDQIC  60
LKVRDGKEWN VGLTKSNNGT RVWLHYGWEK LVGFYSVKSG YFLVFKYENP SPSFYVVIFD  120
HTATEIEYPV KKTRLDKAKE KVKMETYFDD DCLDLDFKDG DLSSGVKKPT NSRWRPPSTG  180
SQQARAMAEA NRFQSMTLNP SFICKIWPSH IHRTKSLSIP KNFADMNLED SITKIILKAS  240
DGRMWSGECG FYWTPKMQRM TFYKYGWKSF IRDNNLAVGD FCVFEMTGKN STTVAFKVES  300
FRAS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819131e-147LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045.
GenBankLN7132651e-147LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016902156.10.0PREDICTED: uncharacterized protein LOC103497524 isoform X1
TrEMBLA0A0A0LJV00.0A0A0A0LJV0_CUCSA; Uncharacterized protein
STRINGXP_008457959.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-18B3 family protein