PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.366510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | B3 | ||||||||
Protein Properties | Length: 305aa MW: 35088.2 Da PI: 9.8988 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.6 | 2e-17 | 26 | 121 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 fkv d+lk++ l +p+kf++e+g+k + ++ l+ ++g++W+v l+ ++++ r++l GW++ v +k+g f+vFk+++ +f +v Cucsa.366510.1 26 FKVV-LDDALKEQKLEIPRKFVREYGLKALLKDQICLKVRDGKEWNVGLTKSNNGTRVWLHYGWEKLVGFYSVKSGYFLVFKYENPsPSF--YVV 117 4544.478999999**************99999****************9999******************************9865555..999 PP EE-S CS B3 96 vfrk 99 +f++ Cucsa.366510.1 118 IFDH 121 9987 PP | |||||||
2 | B3 | 56.6 | 4.6e-18 | 205 | 297 | 4 | 95 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 + ps+ ++++ l++pk+fa+ + ++ + ++++l+ ++gr W+ ++ + + k +r ++ + GWk+F ++n+L +gDf+vF+++g+++++ +k Cucsa.366510.1 205 KIWPSHIHRTKSLSIPKNFADMNLED--SITKIILKASDGRMWSGECGFywTPKMQRmTFYKYGWKSFIRDNNLAVGDFCVFEMTGKNSTTVAFK 297 5668999999**********988433..3358************9995445555555577789********************998877766665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-19 | 21 | 122 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.63E-18 | 21 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.51E-21 | 23 | 120 | No hit | No description |
PROSITE profile | PS50863 | 12.167 | 24 | 122 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-13 | 25 | 122 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.4E-15 | 26 | 121 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-20 | 198 | 302 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.84E-19 | 199 | 294 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.338 | 202 | 300 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-7 | 203 | 300 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-16 | 206 | 297 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.18E-17 | 208 | 302 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MASSSHYRSN SIVKQSSGAL HNPHFFKVVL DDALKEQKLE IPRKFVREYG LKALLKDQIC 60 LKVRDGKEWN VGLTKSNNGT RVWLHYGWEK LVGFYSVKSG YFLVFKYENP SPSFYVVIFD 120 HTATEIEYPV KKTRLDKAKE KVKMETYFDD DCLDLDFKDG DLSSGVKKPT NSRWRPPSTG 180 SQQARAMAEA NRFQSMTLNP SFICKIWPSH IHRTKSLSIP KNFADMNLED SITKIILKAS 240 DGRMWSGECG FYWTPKMQRM TFYKYGWKSF IRDNNLAVGD FCVFEMTGKN STTVAFKVES 300 FRAS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681913 | 1e-147 | LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045. | |||
GenBank | LN713265 | 1e-147 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016902156.1 | 0.0 | PREDICTED: uncharacterized protein LOC103497524 isoform X1 | ||||
TrEMBL | A0A0A0LJV0 | 0.0 | A0A0A0LJV0_CUCSA; Uncharacterized protein | ||||
STRING | XP_008457959.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-18 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.366510.1 |