PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.366500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 290aa    MW: 33809.9 Da    PI: 9.9681
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.366500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.94.2e-1420118199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgr.sefel 92 
                     ffkv +  ++lk + l +p kf++e+g k   + ++ l+   +gr+W+v l+ ++ + r+++   GW+ Fv+   +    f+vFk++++ s+f  
  Cucsa.366500.1  20 FFKVVMA-SALKDQKLEIPTKFVREYGVKAFATNQICLKVaADGRKWNVGLTKSNDGTRVWFHdHGWQTFVEFYSVGLEYFLVFKYERQsSSF-- 111
                     7777765.5556666***********87777888899999899********88888888666549*********************9876777.. PP

                     EEEEE-S CS
              B3  93 vvkvfrk 99 
                     +v +f++
  Cucsa.366500.1 112 YVVIFDR 118
                     9999997 PP

2B334.43.9e-112262844594
                     EEEEEE..EEETTEEEE-.........TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3  45 sWevkliyrkksgryvlt.........kGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     s +++ +++++ ++y+ +         +GW++F k+n+Lk+gDf+vF+++g s+++  +
  Cucsa.366500.1 226 SSNFRWNWEGSCCWYMTKmmkkraeliSGWRKFKKDNNLKVGDFCVFEMIGLSSTRISF 284
                     556666667777777666777777777*********************99877776655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.9E-1716126IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-1816119IPR015300DNA-binding pseudobarrel domain
CDDcd100173.53E-1718117No hitNo description
PROSITE profilePS5086311.13819119IPR003340B3 DNA binding domain
SMARTSM010193.5E-1020119IPR003340B3 DNA binding domain
PfamPF023621.4E-1120118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-10189289IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.8E-11190278IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-8225284IPR003340B3 DNA binding domain
PROSITE profilePS508639.883239289IPR003340B3 DNA binding domain
CDDcd100174.37E-10251289No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDSFNYWKNR PRKALDNPHF FKVVMASALK DQKLEIPTKF VREYGVKAFA TNQICLKVAA  60
DGRKWNVGLT KSNDGTRVWF HDHGWQTFVE FYSVGLEYFL VFKYERQSSS FYVVIFDRTA  120
TEIEYPIKII CLDDAEEKRS VPKETHSKTG EVNFGAVELM DNKKKLWPTT TNQRERAMAS  180
ASAFQSMTLN PSFMCKMSTS HIHPGKSLYT KKVCRDAYRK VHGEHSSNFR WNWEGSCCWY  240
MTKMMKKRAE LISGWRKFKK DNNLKVGDFC VFEMIGLSST RISFKVEIF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819131e-134LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045.
GenBankLN7132651e-134LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148067.11e-168PREDICTED: B3 domain-containing protein REM8-like
TrEMBLA0A1S4E1R11e-141A0A1S4E1R1_CUCME; B3 domain-containing protein At3g18960-like
STRINGXP_004148067.11e-168(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.13e-18B3 family protein