PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.365440.2

Common Name

Csa_6G031440, LOC101210056

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

G2-like

Protein Properties

Length: 371aa MW: 40030.5 Da PI: 7.2928

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.365440.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	93.2	2.2e-29	208	262	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQ YRl+ Cucsa.365440.2 208 KQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQ-YRLH 262 79************************************************9.8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.248	205	265	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-26	205	265	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.12E-14	206	260	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.7E-24	208	262	IPR006447	Myb domain, plants
Pfam	PF00249	4.3E-6	210	258	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MLYSDKMQQI AAKLGFTLSD FADTLEQERR KVLMFQRELP LCLHLVSHAI DCCRQQLSGT 60 TTENRQSECS EQTSSDMGPV LEEFIPINRN GVSDFEKTEK NNKNDDSDLN NLNLAPSDWL 120 RSAQLWNQTS DPPPLNQDLP ENTPVVEVNR NGGAFRPFQK EKTGGGGGGG GASSSSPPAP 180 AAETSSTTET GSGGSSRREE KEAQNQRKQR RCWSPELHRR FLHALQQLGG SHVATPKQIR 240 ELMKVDGLTN DEVKSHLQYR LHTRRPTPTI HNNEGGHAPQ FLVVGGIWVP AAEYAAVSTT 300 TSSGEVVSAA TTNGIYAPVV AAAAPQPLVS TVQKPKPKPK PKIIPSSAVE CNSPTTSSST 360 HTSSVSPASS *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MLYSDKMQQI AAKLGFTLSD FADTLEQERR KVLMFQRELP LCLHLVSHAI DCCRQQLSGT  60
TTENRQSECS EQTSSDMGPV LEEFIPINRN GVSDFEKTEK NNKNDDSDLN NLNLAPSDWL  120
RSAQLWNQTS DPPPLNQDLP ENTPVVEVNR NGGAFRPFQK EKTGGGGGGG GASSSSPPAP  180
AAETSSTTET GSGGSSRREE KEAQNQRKQR RCWSPELHRR FLHALQQLGG SHVATPKQIR  240
ELMKVDGLTN DEVKSHLQYR LHTRRPTPTI HNNEGGHAPQ FLVVGGIWVP AAEYAAVSTT  300
TSSGEVVSAA TTNGIYAPVV AAAAPQPLVS TVQKPKPKPK PKIIPSSAVE CNSPTTSSST  360
HTSSVSPASS *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681817	1e-135	LN681817.1 Cucumis melo genomic scaffold, anchoredscaffold00015.
GenBank	LN713257	1e-135	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011656513.1	0.0	PREDICTED: probable transcription factor GLK2
Swissprot	Q9FPE8	5e-89	HHO3_ARATH; Transcription factor HHO3
TrEMBL	A0A0A0KAT4	0.0	A0A0A0KAT4_CUCSA; Uncharacterized protein
STRING	XP_004164475.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	2e-80	G2-like family protein

Link Out ? help Back to Top
Phytozome	Cucsa.365440.2
Entrez Gene	101210056

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]