PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.365440.1
Common NameCsa_6G031440, LOC101210056
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family G2-like
Protein Properties Length: 372aa    MW: 40158.7 Da    PI: 7.5875
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.365440.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.11.7e-32208263156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Cucsa.365440.1 208 KQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 263
                     79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.9E-29205266IPR009057Homeodomain-like
PROSITE profilePS5129415.05205265IPR017930Myb domain
SuperFamilySSF466891.58E-18206266IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-27208263IPR006447Myb domain, plants
PfamPF002491.5E-7210261IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MLYSDKMQQI AAKLGFTLSD FADTLEQERR KVLMFQRELP LCLHLVSHAI DCCRQQLSGT  60
TTENRQSECS EQTSSDMGPV LEEFIPINRN GVSDFEKTEK NNKNDDSDLN NLNLAPSDWL  120
RSAQLWNQTS DPPPLNQDLP ENTPVVEVNR NGGAFRPFQK EKTGGGGGGG GASSSSPPAP  180
AAETSSTTET GSGGSSRREE KEAQNQRKQR RCWSPELHRR FLHALQQLGG SHVATPKQIR  240
ELMKVDGLTN DEVKSHLQKY RLHTRRPTPT IHNNEGGHAP QFLVVGGIWV PAAEYAAVST  300
TTSSGEVVSA ATTNGIYAPV VAAAAPQPLV STVQKPKPKP KPKIIPSSAV ECNSPTTSSS  360
THTSSVSPAS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-13208261255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-13208261255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-13208261154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-13208261154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-13208261154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-13208261154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-13208261255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-13208261255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-13208261255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-13208261255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-13208261255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-13208261255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00160DAPTransfer from AT1G25550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818171e-135LN681817.1 Cucumis melo genomic scaffold, anchoredscaffold00015.
GenBankLN7132571e-135LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011656513.10.0PREDICTED: probable transcription factor GLK2
SwissprotQ9FPE82e-91HHO3_ARATH; Transcription factor HHO3
TrEMBLA0A0A0KAT40.0A0A0A0KAT4_CUCSA; Uncharacterized protein
STRINGXP_004164475.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39183363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.11e-82G2-like family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]