PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.365300.1 | ||||||||
Common Name | Csa_6G039540, LOC101219003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | CO-like | ||||||||
Protein Properties | Length: 335aa MW: 38396.2 Da PI: 8.1478 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 28.9 | 2.4e-09 | 16 | 58 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +r C+ + +k+++++C ++ +lC++C ++ H+ H++ Cucsa.365300.1 16 ARACDSCVRKRARWYCAADDAFLCQSCDTTVHSAnplarrHQR 58 578*****************************65677777765 PP | |||||||
2 | CCT | 69.3 | 9.9e-24 | 277 | 320 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ Cucsa.365300.1 277 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 320 9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.95 | 14 | 61 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 7.1E-10 | 14 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.0E-8 | 16 | 58 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.47E-9 | 17 | 61 | No hit | No description |
PROSITE profile | PS51017 | 16.083 | 277 | 319 | IPR010402 | CCT domain |
Pfam | PF06203 | 4.1E-18 | 277 | 319 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MMSRKNIANA VGGKTARACD SCVRKRARWY CAADDAFLCQ SCDTTVHSAN PLARRHQRLR 60 LNASNSSPLN SPSWVSGFTR KPRTPRPRPK SNDLIHVSVV PETDDATSHE NEHLEDQLLY 120 RVPNLDVNVS DFGGDVERNL EREWFDIEEE LGLVKVEEDC WRIGEGFDSD QVDFFMDFEE 180 IKMPPLVVGV KNERHEDEGD ESGITDKNKR RVLSLRLDCE AVIAAWGNLQ SPWTNGQRPD 240 FDPDQPWPNS MDLCEVRYGQ RCGEYGFRTA AIGDGGREAR VSRYREKRRT RLFSKKIRYE 300 VRKLNAEKRP RMKGRFVKRT PFAPQPTLPI ITIN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 287 | 303 | RRTRLFSKKIRYEVRKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681817 | 0.0 | LN681817.1 Cucumis melo genomic scaffold, anchoredscaffold00015. | |||
GenBank | LN713257 | 0.0 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004140861.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 6 | ||||
Swissprot | Q8LG76 | 3e-77 | COL6_ARATH; Zinc finger protein CONSTANS-LIKE 6 | ||||
TrEMBL | A0A0A0K964 | 0.0 | A0A0A0K964_CUCSA; Uncharacterized protein | ||||
STRING | XP_004172358.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1473 | 33 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68520.1 | 5e-63 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.365300.1 |
Entrez Gene | 101219003 |
Publications ? help Back to Top | |||
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