PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.365300.1
Common NameCsa_6G039540, LOC101219003
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family CO-like
Protein Properties Length: 335aa    MW: 38396.2 Da    PI: 8.1478
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.365300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.92.4e-091658339
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    +r C+ + +k+++++C  ++ +lC++C ++ H+       H++
  Cucsa.365300.1 16 ARACDSCVRKRARWYCAADDAFLCQSCDTTVHSAnplarrHQR 58
                    578*****************************65677777765 PP
2CCT69.39.9e-24277320144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Cucsa.365300.1 277 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 320
                     9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.951461IPR000315B-box-type zinc finger
SMARTSM003367.1E-101461IPR000315B-box-type zinc finger
PfamPF006434.0E-81658IPR000315B-box-type zinc finger
CDDcd000213.47E-91761No hitNo description
PROSITE profilePS5101716.083277319IPR010402CCT domain
PfamPF062034.1E-18277319IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MMSRKNIANA VGGKTARACD SCVRKRARWY CAADDAFLCQ SCDTTVHSAN PLARRHQRLR  60
LNASNSSPLN SPSWVSGFTR KPRTPRPRPK SNDLIHVSVV PETDDATSHE NEHLEDQLLY  120
RVPNLDVNVS DFGGDVERNL EREWFDIEEE LGLVKVEEDC WRIGEGFDSD QVDFFMDFEE  180
IKMPPLVVGV KNERHEDEGD ESGITDKNKR RVLSLRLDCE AVIAAWGNLQ SPWTNGQRPD  240
FDPDQPWPNS MDLCEVRYGQ RCGEYGFRTA AIGDGGREAR VSRYREKRRT RLFSKKIRYE  300
VRKLNAEKRP RMKGRFVKRT PFAPQPTLPI ITIN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1287303RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818170.0LN681817.1 Cucumis melo genomic scaffold, anchoredscaffold00015.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140861.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 6
SwissprotQ8LG763e-77COL6_ARATH; Zinc finger protein CONSTANS-LIKE 6
TrEMBLA0A0A0K9640.0A0A0A0K964_CUCSA; Uncharacterized protein
STRINGXP_004172358.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.15e-63B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]