PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.365230.1
Common NameCsa_6G040600, LOC101205577
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 463aa    MW: 51506.1 Da    PI: 6.5842
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.365230.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS321.61.6e-98694492373
            GRAS   2 velLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlar..svselykal.ppsetseknsseelaalklfsevsPi 90 
                      +lL+++A+av  ++++  la+ +L rl+el+sp+  ++++Rl+ay+++A +  l +    +++ +   +  + ++++ +++laa++l++e+sP+
  Cucsa.365230.1  69 YHLLTAAADAVLGDHKScdLAHVILVRLNELVSPSHgTNLERLTAYYAQAFQDLLDSapVANKTHHHNhHIHQRDDHTPTDVLAAFQLLQEMSPY 163
                     699********876655559***********777554*****************9985434444444425556666669**************** PP

            GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                     +kf+h+taNqaIleav++++rvHi+D+di++G+QW++L+qa+ s p+ +p+lRiT++++ ++g  s  +++etg+rL  fA+++g pf+f+    
  Cucsa.365230.1 164 VKFGHFTANQAILEAVAEDRRVHIVDYDIMEGIQWASLMQAFVSSPS-APHLRITAISRGANGrrSIGTVQETGRRLVAFAASIGQPFSFHQCKL 257
                     ********************************************766.59*********999899999************************999 PP

            GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerflealeyysalfdsleakl 275
                     ++ e+++++ L++ +gEal+Vn++l+l ++  +s ++     ++L+  kslsP++v++ve+e+ h+ +   ++  +fl++le ysa++dslea +
  Cucsa.365230.1 258 DSDESFRPSGLKLVKGEALVVNCMLHLPHFSYRSPESIA---SFLSGAKSLSPRIVTLVEEEIGHGPTidgDYKVQFLDSLERYSAIYDSLEAVI 349
                     9****************************9866555554...8*********************9744444************************ PP

            GRAS 276 preseerikvErellgreivnvvacegaer..rerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpL 367
                     p ++++r+ vEr++lg++i+  +   g++r  ++++e    W e+le++G+k+v++s  + +qa+lll  ++ dgyrvee  ++ lvlgWk+++L
  Cucsa.365230.1 350 PMKNRARALVERVFLGPRISATLRRIGQRRwsTAEMEDNCLWGEKLEKMGLKTVKISFANHCQARLLLGLFN-DGYRVEELgNNKLVLGWKSKRL 443
                     ************************99988633778888999*******************************.******98799999******** PP

            GRAS 368 vsvSaW 373
                     +svS W
  Cucsa.365230.1 444 LSVSIW 449
                     ****** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.20442430IPR005202Transcription factor GRAS
PfamPF035145.6E-9669449IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MALAINNPPK DIALSNYSTS TNNSDDHCHL AGNWNYGSPI VDWETFSGTH NDFLDDRDEE  60
DEFKGLRLYH LLTAAADAVL GDHKSCDLAH VILVRLNELV SPSHGTNLER LTAYYAQAFQ  120
DLLDSAPVAN KTHHHNHHIH QRDDHTPTDV LAAFQLLQEM SPYVKFGHFT ANQAILEAVA  180
EDRRVHIVDY DIMEGIQWAS LMQAFVSSPS APHLRITAIS RGANGRRSIG TVQETGRRLV  240
AFAASIGQPF SFHQCKLDSD ESFRPSGLKL VKGEALVVNC MLHLPHFSYR SPESIASFLS  300
GAKSLSPRIV TLVEEEIGHG PTIDGDYKVQ FLDSLERYSA IYDSLEAVIP MKNRARALVE  360
RVFLGPRISA TLRRIGQRRW STAEMEDNCL WGEKLEKMGL KTVKISFANH CQARLLLGLF  420
NDGYRVEELG NNKLVLGWKS KRLLSVSIWG SSSSSSSLSD SE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-50574498377Protein SCARECROW
5b3h_D1e-50574498377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818170.0LN681817.1 Cucumis melo genomic scaffold, anchoredscaffold00015.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140976.10.0PREDICTED: nodulation-signaling pathway 2 protein
SwissprotQ5NE241e-177NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A0A0KDX40.0A0A0A0KDX4_CUCSA; Uncharacterized protein
STRINGXP_004140976.10.0(Cucumis sativus)
STRINGXP_004164127.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-141GRAS family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]