PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.364590.1
Common NameCsa_6G046240, LOC101210268
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 234aa    MW: 26439.5 Da    PI: 8.8753
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.364590.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.85.9e-091659344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT  Ed+l+ +a    + +   +W ++a +++ g+++ ++k+++
   Cucsa.364590.1 16 HWTRSEDKLFEEALVVVPANlpdRWQRVADHVP-GKSPREVKDHY 59
                     5*****************99*************.**********9 PP
2Myb_DNA-binding44.43.8e-14115159347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + k++G+g+W++I+r +  +Rt+ q+ s+ qky
   Cucsa.364590.1 115 PWTEEEHRLFLLGLKKFGKGDWRSISRNVVITRTPTQVASHAQKY 159
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.545967IPR017930Myb domain
SMARTSM007176.2E-81365IPR001005SANT/Myb domain
SuperFamilySSF466891.05E-111571IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-51562IPR009057Homeodomain-like
PfamPF002492.1E-71659IPR001005SANT/Myb domain
CDDcd001675.14E-81759No hitNo description
PROSITE profilePS5129420.748108164IPR017930Myb domain
SuperFamilySSF466891.15E-16110164IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-17111163IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.7E-11112158IPR009057Homeodomain-like
SMARTSM007171.6E-12112162IPR001005SANT/Myb domain
CDDcd001678.00E-11115160No hitNo description
PfamPF002491.0E-12115159IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MFHHTRWTTM TQSSTHWTRS EDKLFEEALV VVPANLPDRW QRVADHVPGK SPREVKDHYD  60
ALVHDVLEID SGRVELPSYA DESAVGLPEW DSSGQISFGS KAKHGGDNER KKGTPWTEEE  120
HRLFLLGLKK FGKGDWRSIS RNVVITRTPT QVASHAQKYF LRQTSGKKER KRSSIHDITT  180
VDNNSIPMPI DPNWISPAPN NPTIQSTMQQ LSPTSHGQDQ GASLGFQNYR FPM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1417791173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00055PBMTransfer from AT5G04760Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818210.0LN681821.1 Cucumis melo genomic scaffold, anchoredscaffold00040.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140910.11e-174PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H74e-62DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0A0KE731e-173A0A0A0KE73_CUCSA; Syringolide-induced protein 1-3-1B
STRINGXP_004140910.11e-174(Cucumis sativus)
STRINGXP_004169172.11e-174(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60683251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.14e-69MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  5. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]