PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.364380.5

Common Name

Csa_6G051480, LOC101213915

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 300aa MW: 33390.6 Da PI: 8.7398

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.364380.5	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.1	5.3e-15	251	294	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++L+k+ Cucsa.364380.5 251 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKR 294 79****************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.0E-14	241	294	No hit	No description
SMART	SM00338	1.7E-7	247	298	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.691	249	294	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.19E-10	251	294	No hit	No description
Pfam	PF00170	7.8E-13	251	294	IPR004827	Basic-leucine zipper domain
CDD	cd14707	2.94E-22	251	293	No hit	No description
PROSITE pattern	PS00036	0	254	269	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MGIQTMGSQA GGDPNGKQSQ FQPLVRQNSL YSLTLDEVQN QLGDLGKPLI SMNLDELLKN 60 VWTAEANQTV GKDNEDNNIL ANQTSLQRQA SLSLNGALSK KTVDEVWRDI QQSKDSEEKK 120 SRERQPTLGE MTLEDFLVKA GVVAETSSNK KGAGPVVEID ANITPQFQQT QWMQYPQPQY 180 QSQQAAMMGV YMSGQPIPQP LHVGGGAVMD VPYVDNQLTL PTPLMGALSD TQASGRKRGA 240 PEDMIEKTVE RRQKRMIKNR ESAARSRARK QAYTNELENK VSRLEEENER LRKRKVSFL*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00409	DAP	Transfer from AT3G56850	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681821	0.0	LN681821.1 Cucumis melo genomic scaffold, anchoredscaffold00040.
GenBank	LN713257	0.0	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004140925.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_011656585.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_011656586.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_011656587.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_011656588.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	1e-80	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A0A0KE91	0.0	A0A0A0KE91_CUCSA; Uncharacterized protein
STRING	XP_004140925.1	0.0	(Cucumis sativus)
STRING	XP_004171515.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	3e-70	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Cucsa.364380.5
Entrez Gene	101213915

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]