PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.363740.1

Common Name

Csa_6G056520, LOC101223110

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 315aa MW: 34653.8 Da PI: 8.9105

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.363740.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.4	3.6e-14	232	293	3	63
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL.kkeleelkkevaklksev 63 + +r+rr++kNRe+A rsR+RK+a++ eLe + Le+eN++L ++++e+ k+ ++l ++v Cucsa.363740.1 232 AEQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLlREKAERTKERLKQLMDKV 293 568**************************************963889999999999987775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.7E-12	227	290	No hit	No description
SMART	SM00338	2.2E-9	230	292	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.944	232	284	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.7E-12	232	292	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.67E-17	234	280	No hit	No description
SuperFamily	SSF57959	1.76E-9	235	285	No hit	No description
PROSITE pattern	PS00036	0	237	252	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MASSKLFPSS NSRNSDLSRG SSSSSSSSSA SLLKPQFLSN HSRNYDTPSR NPPPHTMTVD 60 GLLPNAFDSN PTESSILLDA QITLVDSPNP SSLHIDTTTP TTTNSSAVID SNHNSSSVAP 120 PPKTVDDVWR EIVSGERKEL KEEVANEIIT LEDFLMKSGA VPVEDVKFPQ TERLSGGIFS 180 FDPIPSTTFQ ALDKIEGSII GFANGVDLIG SGGSGGRGKR GRAALEPLDK AAEQRQRRMI 240 KNRESAARSR ERKQAYQVEL ESLAVRLEEE NEQLLREKAE RTKERLKQLM DKVIPVVEKR 300 RPQRVIRRVN SMQW*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269\|PubMed:8146148}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681815	0.0	LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBank	LN713257	0.0	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004140964.1	0.0	PREDICTED: G-box-binding factor 4
Swissprot	P42777	4e-57	GBF4_ARATH; G-box-binding factor 4
TrEMBL	A0A0A0KBB4	0.0	A0A0A0KBB4_CUCSA; Uncharacterized protein
STRING	XP_004140964.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2028	34	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44080.1	7e-61	bZIP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.363740.1
Entrez Gene	101223110

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]