PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.363170.1 | ||||||||
Common Name | Csa_6G074030, LOC101222248 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 842aa MW: 90136.3 Da PI: 5.7946 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65 | 1.1e-20 | 135 | 190 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r eL+++l L++rqVk+WFqNrR+++k Cucsa.363170.1 135 KKRYHRHTPQQIQELEAVFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMK 190 688999***********************************************999 PP | |||||||
2 | START | 211.2 | 3.8e-66 | 343 | 569 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 ela++a++elvk+a+ +ep+W s e++n++e++++f++ + + +ea+r+sg+v+ ++ lve+l+d++ +W e+++ + +t+ Cucsa.363170.1 343 ELALAAMDELVKMAQTDEPLWIGSLeggrEILNQEEYMRTFTPCIGmkpngFVTEASRESGMVIINSLALVETLMDSN-RWAEMFPcmiaRTTTT 436 5899**************************************9988999*9***************************.**************** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe..sssvvRaellpSgiliepksnghskvtwve 168 +vis+g galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvSvd ++ p+ ss+ +++lpSg+++++++ng+skvtwve Cucsa.363170.1 437 DVISTGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSVDAMRETPTggGSSFGNCRRLPSGCVVQDMPNGYSKVTWVE 531 *************************************************************999******************************* PP -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 h++++++++h+l+r+l++sg+ +ga++wv tlqrqce+ Cucsa.363170.1 532 HAEYDDSQVHQLYRPLLSSGMGFGAQRWVTTLQRQCEC 569 ************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.98E-21 | 117 | 192 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.5E-22 | 122 | 192 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.2 | 132 | 192 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.3E-18 | 133 | 196 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.96E-19 | 134 | 192 | No hit | No description |
Pfam | PF00046 | 2.9E-18 | 135 | 190 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 167 | 190 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 43.789 | 334 | 572 | IPR002913 | START domain |
SuperFamily | SSF55961 | 5.01E-33 | 336 | 569 | No hit | No description |
CDD | cd08875 | 4.96E-126 | 338 | 568 | No hit | No description |
SMART | SM00234 | 4.9E-51 | 343 | 569 | IPR002913 | START domain |
Pfam | PF01852 | 4.5E-58 | 343 | 569 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.28E-23 | 597 | 767 | No hit | No description |
SuperFamily | SSF55961 | 2.28E-23 | 794 | 834 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009827 | Biological Process | plant-type cell wall modification | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0043481 | Biological Process | anthocyanin accumulation in tissues in response to UV light | ||||
GO:0048765 | Biological Process | root hair cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 842 aa Download sequence Send to blast |
MSFGGFLDGG GGGGGGGGAR ILADLPYTNN STTNANNNPT GGIGGGGNMS SSAIAPPRLI 60 TQSLTKSMFN SPGLSLALTN MDGGPGDLAA RLPEGFEHNV GRRGREEEHE SRSGSDNMDG 120 GSGDDQDAAD NPPRKKRYHR HTPQQIQELE AVFKECPHPD EKQRLELSRR LCLETRQVKF 180 WFQNRRTQMK TQLERHENTL LRQENDKLRA ENMSIRDAMR NPICSNCGGP AIIGEISLEE 240 QQLRIENARL KDELDRVCAL AGKFLGRPIS SLANSIAPPL PSSSLELGVG SNGFGSLTMA 300 TSMPIGPDFG GGLSGNLAVV QAPARPTPGM GLDRSVERSM LLELALAAMD ELVKMAQTDE 360 PLWIGSLEGG REILNQEEYM RTFTPCIGMK PNGFVTEASR ESGMVIINSL ALVETLMDSN 420 RWAEMFPCMI ARTTTTDVIS TGMGGTRNGA LQLMHAELQV LSPLVPVREV NFLRFCKQHA 480 EGVWAVVDVS VDAMRETPTG GGSSFGNCRR LPSGCVVQDM PNGYSKVTWV EHAEYDDSQV 540 HQLYRPLLSS GMGFGAQRWV TTLQRQCECL AILMSSAVPI RDHTAITAGG RRSMLKLAQR 600 MTANFCAGVC ASTVHKWNKL NAGSVDEDVR VMTRKSVDDP GEPPGIVLSA ATSVWLPVSP 660 QRLFDFLRDE RLRSEWDILS NGGPMQEMAH IAKGQDHGNC VSLLRASAMN ANQSSMLILQ 720 ETCIDAAGSL VVYAPVDIPA MHVVMNGGDS AYVALLPSGF AIVPDGAVTG GLTATNGSSP 780 SGGEGPQSQR AAGGGSLLTV AFQILVNSLP TAKLTVESVE TVNNLISCTV QKIKAALQCE 840 T* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00421 | DAP | Transfer from AT4G00730 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681925 | 0.0 | LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004144982.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | A0A0A0KBG6 | 0.0 | A0A0A0KBG6_CUCSA; Uncharacterized protein | ||||
STRING | XP_004144982.1 | 0.0 | (Cucumis sativus) | ||||
STRING | XP_004168157.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1192 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.363170.1 |
Entrez Gene | 101222248 |
Publications ? help Back to Top | |||
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