PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.363020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TCP | ||||||||
Protein Properties | Length: 195aa MW: 20663.4 Da PI: 10.6018 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 116.2 | 4.3e-36 | 2 | 100 | 6 | 101 |
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.........eaesssssasnsssgkaa 91 +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++++a ++ ++ sss+++s a Cucsa.363020.1 2 PSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTIPAIAMsvngtlkipTTTSSSNQDS------AD 90 689*********************************************************999994444333333221112222222......11 PP TCP 92 ksaakskksq 101 +sa k+++++ Cucsa.363020.1 91 PSAVKKRRKR 100 1111111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.4E-31 | 3 | 101 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.204 | 4 | 58 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0048364 | Biological Process | root development | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
RPSTKDRHTK VEGRGRRIRI PATCAARIFQ LTRELGHKSD GETIRWLLER AEPAIIAATG 60 TGTIPAIAMS VNGTLKIPTT TSSSNQDSAD PSAVKKRRKR PANSDYVDVN DALSVSISAS 120 NVAGSSAVQQ AFPPGFVPVW AIPSNAIIPG AVFMMWAKGG PLGLQEEQQQ QQQQQQHHVV 180 VPSPHIPGSC MGGG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 93 | 100 | VKKRRKRP |
2 | 94 | 98 | KKRRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00316 | DAP | Transfer from AT2G45680 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681925 | 0.0 | LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004145050.1 | 1e-107 | PREDICTED: transcription factor TCP9 | ||||
Swissprot | O64647 | 2e-70 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | A0A0A0KCU1 | 1e-106 | A0A0A0KCU1_CUCSA; Uncharacterized protein | ||||
STRING | XP_004145050.1 | 1e-107 | (Cucumis sativus) | ||||
STRING | XP_004168259.1 | 1e-107 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2118 | 30 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 7e-59 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.363020.1 |