PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.362830.1

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

LBD

Protein Properties

Length: 125aa MW: 13313.4 Da PI: 8.7065

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.362830.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	117.1	1.1e-36	29	118	1	89
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkC+k+C++apyf ++q +++fa+vhk+FGasn +kll+++p+ +r da +l+yeA ar+rdPvyG+v+ i++lqqq+++ Cucsa.362830.1 29 PCGACKFLRRKCVKGCIFAPYFDSDQgAAHFAAVHKVFGASNASKLLHRIPPPKRLDACVTLCYEALARVRDPVYGCVSQIFSLQQQVSS 118 7*********************9989*********************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.261	28	124	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.5E-36	29	118	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MTHTQTSIAL HQHTLMSTGE GGVAHGGGPC GACKFLRRKC VKGCIFAPYF DSDQGAAHFA 60 AVHKVFGASN ASKLLHRIPP PKRLDACVTL CYEALARVRD PVYGCVSQIF SLQQQVSSLI 120 IVDT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-35	26	119	8	100	LOB family transfactor Ramosa2.1
5ly0_B	2e-35	26	119	8	100	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681925	1e-166	LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBank	LN713265	1e-166	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004145059.2	5e-82	PREDICTED: LOB domain-containing protein 19
Swissprot	O81322	5e-47	LBD31_ARATH; LOB domain-containing protein 31
TrEMBL	A0A0A0KCW1	5e-69	A0A0A0KCW1_CUCSA; Uncharacterized protein
STRING	XP_004145059.1	8e-70	(Cucumis sativus)
STRING	XP_004153748.1	8e-70	(Cucumis sativus)
STRING	XP_004160688.1	8e-70	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1771	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	2e-48	LBD family protein

Link Out ? help Back to Top
Phytozome	Cucsa.362830.1